View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7959_high_2 (Length: 524)
Name: NF7959_high_2
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7959_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 49755364 - 49755865
Alignment:
| Q |
16 |
atacaaaaacaaaatgagctctgaactaattcacagaaaccaaacaagagatcaaaccacagattcatcatcccatcgtgataatcctcttccaagaacg |
115 |
Q |
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| T |
49755364 |
atacaaaaacaaaatgagttctgaactaattcacagaaaccaaacaagagatcaaaccacagattcatcatcccatcgtgataatcctcttccaagaacg |
49755463 |
T |
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| Q |
116 |
agaacaaaca---------tgcttctaaatcgagtccctttccttctcattggaatagcaatttccactttcttcttccactatctcccttctcggtcca |
206 |
Q |
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| T |
49755464 |
agaacaaacatcatcaacatgcttctaaatcgagtccctttccttctcattggaatagcaatttccactttcttcttccactatctcccttctcgatcca |
49755563 |
T |
|
| Q |
207 |
ctcttccacaacatcatgactcttcgtcgttcgttggaaccgagttaactcttccgactaggcgagttctgttagaggaacacggtagagatgaaagaaa |
306 |
Q |
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| T |
49755564 |
ctcttccacaacatcatgactcttcttcgttcgttggaacggagttaactcttccgactaggcgagttcttttagaggaacacggtagagatgaaagaaa |
49755663 |
T |
|
| Q |
307 |
acgaagagttccattggccgttggattgaaaagcaagagacagaagagagtactggttaccggtggagctggtttcgttggaagtcatcttgttgatcgt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49755664 |
acgaagagttccattggccgttggattgaaaagcaagagacagaagagagtactggttaccggtggagctggtttcgttggaagtcatcttgtggatcgt |
49755763 |
T |
|
| Q |
407 |
ttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaacgttgttcatcatcttggtaatcccaattttgaactta |
506 |
Q |
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| T |
49755764 |
ttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaatgttgttcatcatattggtaatcccaattttgaactta |
49755863 |
T |
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| Q |
507 |
tt |
508 |
Q |
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| T |
49755864 |
tt |
49755865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 468
Target Start/End: Original strand, 29126946 - 29127054
Alignment:
| Q |
360 |
tggttaccggtggagctggtttcgttggaagtcatcttgttgatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaag |
459 |
Q |
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||||||||||||| |||||||| |||||||||||||| |||||| ||||||| ||||| || |||| || || |||||||||| ||||||||| || |
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| T |
29126946 |
tggttaccggtggtgctggttttgttggaagtcatctggttgataagttgattggtagagggaatgatgttattgttattgataatttttttactggtag |
29127045 |
T |
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| Q |
460 |
gaaagagaa |
468 |
Q |
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| T |
29127046 |
gaaagagaa |
29127054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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