View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7959_high_4 (Length: 358)
Name: NF7959_high_4
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7959_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 50468272 - 50467944
Alignment:
| Q |
19 |
atttggtctccgtaaaataatatnnnnnnnnncttatactcgttaggaagttaattaaacaattctgaaacagagaggttggggaataaccatagttgaa |
118 |
Q |
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| T |
50468272 |
atttggtctccgtaaaataatataaaaaaaaccttatactcgttaggaagttaattaaacaattctgaaacagagaggttggggaataaccatagttgaa |
50468173 |
T |
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| Q |
119 |
aattgaaattggcatgtgcatccatgcatggagcatgaccaatagccaataagtgtagttggagacataacagttcacttccaactatatttttctctta |
218 |
Q |
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| T |
50468172 |
aattgaaattggcatgtgcatccatgcatggagcatgaccaatagccaataagtgtagttggagacataacagttcacttccaactatatttttctctta |
50468073 |
T |
|
| Q |
219 |
gaacccaagattcggaagacataatgatacaaagattccacacaaggttatcacttctacggttctactactaatttaaaaagagatttcaaacacattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50468072 |
gaacccaagattcggaagacataatgatacaaagattccacacaaggatatcacttctacggttctactactaatttaaaaagagatttcaaacacattg |
50467973 |
T |
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| Q |
319 |
gagaaattaaattattcatgttcatctca |
347 |
Q |
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||||||||||||||||||| ||||||||| |
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| T |
50467972 |
gagaaattaaattattcatattcatctca |
50467944 |
T |
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