View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7959_high_8 (Length: 273)
Name: NF7959_high_8
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7959_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14304683 - 14304940
Alignment:
| Q |
1 |
tactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaag |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304683 |
tactgttttcctctggtttcggccaattgttttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaag |
14304782 |
T |
|
| Q |
101 |
gggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14304783 |
gggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaatgggcataaggactcaaagttctatcgatt |
14304882 |
T |
|
| Q |
201 |
gaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatg |
258 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14304883 |
gaaatcgatggatatgtggctactacatcggatattcttatcacatgaatacctgatg |
14304940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14321074 - 14321331
Alignment:
| Q |
1 |
tactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14321074 |
tactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagtttaag |
14321173 |
T |
|
| Q |
101 |
gggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgatt |
200 |
Q |
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|||||||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| | |
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| T |
14321174 |
gggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctatcggtc |
14321273 |
T |
|
| Q |
201 |
gaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatg |
258 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14321274 |
gaaattgaccgatatgttgctactacatcggatattcttatcacgtgaatacctgatg |
14321331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14282925 - 14283182
Alignment:
| Q |
1 |
tactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |
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|
| T |
14282925 |
tactattttcctctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaag |
14283024 |
T |
|
| Q |
101 |
gggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgatt |
200 |
Q |
| |
|
|||||||||||| |||||||| || ||||| |||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
14283025 |
gggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtg |
14283124 |
T |
|
| Q |
201 |
gaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatg |
258 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14283125 |
gaaactgatggatatgttgctactacatcggatattcttatcacatgaatacctgatg |
14283182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 25885756 - 25886013
Alignment:
| Q |
1 |
tactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25885756 |
tactattttcctctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaacatcttctagtttaag |
25885855 |
T |
|
| Q |
101 |
gggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgatt |
200 |
Q |
| |
|
||| |||| ||| |||||||| | ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||| || |
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| T |
25885856 |
gggagttttgtaacctttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagtt |
25885955 |
T |
|
| Q |
201 |
gaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatg |
258 |
Q |
| |
|
| || ||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25885956 |
ggaaccgatgtatatgtcgctactacatcggatattcttatcacatgaatccctgatg |
25886013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 44349600 - 44349857
Alignment:
| Q |
1 |
tactgttttcctctggttttggccaattgttttgaaaaagttgagatattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
44349600 |
tactgttttcctctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaatatcttctagtttaag |
44349699 |
T |
|
| Q |
101 |
gggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaacaggcataaggactcaaagttctatcgatt |
200 |
Q |
| |
|
||| |||| ||| || ||||| | ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||| | |
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| T |
44349700 |
gggagttttgtaaccgttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagtc |
44349799 |
T |
|
| Q |
201 |
gaaatcgatggatatgttgctactacatcggatattcttatcacatgaatacctgatg |
258 |
Q |
| |
|
| || |||| |||||| ||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
44349800 |
ggaactgatgtatatgtcgctactacatcggatattcttatcacaagaatccctgatg |
44349857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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