View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7959_low_1 (Length: 548)

Name: NF7959_low_1
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7959_low_1
NF7959_low_1
[»] chr1 (2 HSPs)
chr1 (13-524)||(4428094-4428600)
chr1 (14-524)||(4439319-4439829)
[»] chr2 (2 HSPs)
chr2 (311-441)||(20694504-20694634)
chr2 (37-130)||(20695697-20695790)
[»] chr3 (6 HSPs)
chr3 (384-474)||(9448146-9448236)
chr3 (384-477)||(9343677-9343770)
chr3 (384-524)||(9494955-9495095)
chr3 (386-473)||(9329670-9329757)
chr3 (384-442)||(9432719-9432777)
chr3 (388-473)||(9336376-9336461)
[»] chr8 (1 HSPs)
chr8 (384-474)||(13170829-13170919)
[»] chr6 (4 HSPs)
chr6 (385-472)||(7012644-7012731)
chr6 (344-414)||(213314-213384)
chr6 (385-472)||(7025580-7025667)
chr6 (385-470)||(7041341-7041426)
[»] chr5 (1 HSPs)
chr5 (344-441)||(33541413-33541510)
[»] chr7 (1 HSPs)
chr7 (385-473)||(450315-450403)


Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Original strand, 4428094 - 4428600
Alignment:
Q  13 aatatgctcagggagactggttacatcaatcatcaccgatccaaattgcatcttgtttcctgatctaaatacttaagattcctaataattagctaagtaa 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4428094 aatatgctcagggagactggttgcatcaatcatcaccgatccaaattgcatcttgtttcctgatccaaatacttaagattcctaataattagctaagtaa 4428193  T
Q  113 tatatttggcccagatttgtttctaaacatatatatattctgcaaaagcaaacaaggaaagaagataataaacggtcatcaatgttacatctggtttaga 212  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4428194 tatatttggcccagatttgtttctaaacatatat----tctgcaaaagcaa-caaggaaagaagataataaacggtcatcaatgttacatctggtttaga 4428288  T
Q  213 aactacataatcataataataactaggcatggtgatgtaatgcatatattcatataatatttcaatttttctatttctgcaagtacagttgaaaaagatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4428289 aactacataatcataataataactaggcatggtgatgtaatgcatatattcatataatatttcaatttttctatttctgcaagtacagttgaaaaagatt 4428388  T
Q  313 atctaatctgacaacggaaactaagcaaaataatgcaagataacatactcatttaggaacgcagcattcgccgatccactctgtaggtggccagaacaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4428389 atctaatctgacaacggaaactaagcaaaataatgcaagataacatactcatttaggaacgcagcattcgccgatccactctgtaggtggccagaacaag 4428488  T
Q  413 ttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttctcatattgcatgtttttacaattaaaatggagga 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  4428489 ttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttcccatattgcatgtttttacaattaaagtggagga 4428588  T
Q  513 aggcatcatcaa 524  Q
    ||||||||||||    
T  4428589 aggcatcatcaa 4428600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 524
Target Start/End: Original strand, 4439319 - 4439829
Alignment:
Q  14 atatgctcagggagactggttacatcaatcatcaccgatccaaattgcatcttgtttcctgatctaaatacttaagattcctaataattagctaagtaat 113  Q
    ||||||||| | |||||||||||||||||||||||  |||||||||||||||||||| || ||| ||||| |||||||||| ||||||||||||||||||    
T  4439319 atatgctcaagtagactggttacatcaatcatcactaatccaaattgcatcttgtttactaatccaaatatttaagattcccaataattagctaagtaat 4439418  T
Q  114 a---tatttggcccagatttgtttctaaacatatatatattctgcaaaagcaaacaaggaaagaagataataaacggtcatcaatgtt---acatctggt 207  Q
    |   ||||||| ||||||||||| |||||||||||     |||||||||| || ||||||||||||||||||||||||||||||||||   |||||| ||    
T  4439419 aatatatttggtccagatttgttgctaaacatatag----tctgcaaaagtaa-caaggaaagaagataataaacggtcatcaatgttgttacatctagt 4439513  T
Q  208 ttagaaactacataatcataataataactaggcatggtgatgtaatgcatatattcatataatatttcaatttttctatttctgcaagtacagttgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4439514 ttagaaactacataatcataataataactaggcatggtgatgtaaagcacatattcatataatattttaatttttctatttctgcaagtacagttgaaaa 4439613  T
Q  308 agattatctaatctgacaacggaaactaagcaaaataatgcaagataacatactcatttaggaacgcagcattcgccgatccactctgtaggtggccaga 407  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  4439614 -gattatctaatctgacaacggaagctaagcaaaataatgcaagataacatactcatttaggaacgcaacattcgccgatccactctgcaggtggccaga 4439712  T
Q  408 acaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttctcatattgcatgtttttacaattaaaatg 507  Q
    ||||||||||||| || ||||||||||||||||||| |||||  | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||     
T  4439713 acaagttaaaatagtcaggacaatcagacaaaggcgaaagctttccttgatccaagtcaaaaacacagttcccatattgcatgtttttaccattaaaatt 4439812  T
Q  508 gaggaaggcatcatcaa 524  Q
    |||||||||||||||||    
T  4439813 gaggaaggcatcatcaa 4439829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 441
Target Start/End: Complemental strand, 20694634 - 20694504
Alignment:
Q  311 ttatctaatctgacaacggaaactaagcaaaataatgcaagataacatactcatttaggaacgcagcattcgccgatccactctgtaggtggccagaaca 410  Q
    ||||||||||||||| ||||||||||||  ||||| | |||||||||||||||  ||| || |||| |||   |||||||||| | ||| ||||||||||    
T  20694634 ttatctaatctgacagcggaaactaagctgaataacggaagataacatactcaactagaaatgcaggattttacgatccactcaggaggaggccagaaca 20694535  T
Q  411 agttaaaatattccggacaatcagacaaagg 441  Q
    ||||||||||||| ||| |||| ||||||||    
T  20694534 agttaaaatattcaggataatcggacaaagg 20694504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 20695790 - 20695697
Alignment:
Q  37 atcaatcatcaccgatccaaattgcatcttgtttcctgatctaaatacttaagattcctaataattagctaagtaatatatttggcccagattt 130  Q
    ||||| |||||  ||||| ||| ||| | |||||||| |||  |||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  20695790 atcaaccatcattgatcccaatagcaacctgtttcctaatcccaatatttaagattcctaataattagctcagcaatatatttggcccagattt 20695697  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 474
Target Start/End: Original strand, 9448146 - 9448236
Alignment:
Q  384 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacaca 474  Q
    |||||||||||| |||||||||||||||||| |||  ||| || |||||||||||||| | |||| ||| ||||||||||| |||||||||    
T  9448146 cgatccactctggaggtggccagaacaagttcaaaatttcagggcaatcagacaaaggtgaaagcaggccttgatccaagtaaaaaacaca 9448236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 477
Target Start/End: Original strand, 9343677 - 9343770
Alignment:
Q  384 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagtt 477  Q
    |||||||||| | |||||||||||||||| |||||||||| ||||||||||||| ||| | |||| | | |||||||| || ||||||||||||    
T  9343677 cgatccactccggaggtggccagaacaaggtaaaatattcaggacaatcagacagaggtgaaagccgaccttgatccatgtgaaaaacacagtt 9343770  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 524
Target Start/End: Complemental strand, 9495095 - 9494955
Alignment:
Q  384 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacacagttctcata 483  Q
    ||||||| || | ||||||||||||||||||||||||||| ||||| ||| ||||||||| || | | | || | ||||||||||||  || ||| ||||    
T  9495095 cgatccaatccggaggtggccagaacaagttaaaatattcaggacagtcacacaaaggcgaaacccgaccttcaaccaagtcaaaaatgcaattcccata 9494996  T
Q  484 ttgcatgtttttacaattaaaatggaggaaggcatcatcaa 524  Q
    | | ||||||| | ||||||||| ||||| ||| |||||||    
T  9494995 tagaatgttttcaaaattaaaattgaggatggcgtcatcaa 9494955  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 9329670 - 9329757
Alignment:
Q  386 atccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacac 473  Q
    |||||||||| ||||||||||||||| || |||||||| ||| |||| |||||||| | |  ||| | ||||||||||| ||||||||    
T  9329670 atccactctggaggtggccagaacaacttgaaatattcaggataatccgacaaaggtgaagcctgaccttgatccaagtgaaaaacac 9329757  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 9432719 - 9432777
Alignment:
Q  384 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggc 442  Q
    |||||||||| | ||||||||||||||||||  ||||||| ||| ||||||||||||||    
T  9432719 cgatccactccggaggtggccagaacaagttgtaatattcaggataatcagacaaaggc 9432777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 9336376 - 9336461
Alignment:
Q  388 ccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacac 473  Q
    |||| ||| ||||||||||||||| || |||||||| ||| |||| |||||||| | |  ||| | ||||||||||| ||||||||    
T  9336376 ccacgctggaggtggccagaacaacttgaaatattcgggataatccgacaaaggtgaagcctgaccttgatccaagtgaaaaacac 9336461  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 13170919 - 13170829
Alignment:
Q  384 cgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacaca 474  Q
    ||||||| |||| ||||||||| |||||||| || || || ||||||||||| ||||| | |||| ||| ||||||||||| |||||||||    
T  13170919 cgatccattctggaggtggccaaaacaagttgaagtactcgggacaatcagataaaggggaaagccggcattgatccaagtgaaaaacaca 13170829  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 7012644 - 7012731
Alignment:
Q  385 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaaca 472  Q
    ||||||||||| ||||||||| ||||||||  ||||||| ||||||||||||||| ||| | |  | | |||||||||||| ||||||    
T  7012644 gatccactctgcaggtggccataacaagttggaatattcgggacaatcagacaaaagcgaatgtcgaccttgatccaagtccaaaaca 7012731  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 213384 - 213314
Alignment:
Q  344 aatgcaagataacatactcatttaggaacgcagcattcgccgatccactctgtaggtggccagaacaagtt 414  Q
    |||||||||||||||||||| ||| |||  |||| || | |||||||||| | ||||||||||||||||||    
T  213384 aatgcaagataacatactcacttacgaattcagcttttgacgatccactcgggaggtggccagaacaagtt 213314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 7025580 - 7025667
Alignment:
Q  385 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaaca 472  Q
    ||||||||||| ||||||||||||||||||  ||||||| ||| |||| |||||| ||| | || | | | |||||||||| ||||||    
T  7025580 gatccactctggaggtggccagaacaagttggaatattcaggataatcggacaaaagcgaatgccgacctagatccaagtccaaaaca 7025667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 7041341 - 7041426
Alignment:
Q  385 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaa 470  Q
    |||||||| || ||||||||||||||||||  ||||||| ||| ||||||| | ||||| | || | | |||||||||||| ||||    
T  7041341 gatccactttggaggtggccagaacaagttggaatattcaggataatcagatagaggcgaatgccgaccttgatccaagtccaaaa 7041426  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 441
Target Start/End: Original strand, 33541413 - 33541510
Alignment:
Q  344 aatgcaagataacatactcatttaggaacgcagcattcgccgatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaagg 441  Q
    |||||| | ||||||||||| ||| ||| ||||| || | |||||||||||| |||  ||  ||||||||| |||||||||||| |||| ||||||||    
T  33541413 aatgcaggttaacatactcagttacgaatgcagcttttgacgatccactctggaggctgcgggaacaagttgaaatattccggataatcggacaaagg 33541510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 450403 - 450315
Alignment:
Q  385 gatccactctgtaggtggccagaacaagttaaaatattccggacaatcagacaaaggcgtaagctggcgttgatccaagtcaaaaacac 473  Q
    |||||| |||| ||||||||||||||| || ||||| |||||| |||||||||| || | || | | | ||||||||||| ||||||||    
T  450403 gatccaatctggaggtggccagaacaacttgaaataatccggataatcagacaagggtgaaacccgaccttgatccaagtgaaaaacac 450315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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