View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7959_low_11 (Length: 241)
Name: NF7959_low_11
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7959_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14304678 - 14304455
Alignment:
| Q |
1 |
tccagttggagttaccctttttaggtgtttttggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304678 |
tccagttggagttaccctttttaggtgtttttggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattg |
14304579 |
T |
|
| Q |
101 |
ctgattcagagttttgttgatttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcggcaaaatctgttgaag |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14304578 |
ctgattcagagttttgttgatttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcagcaaaatctgttgaag |
14304479 |
T |
|
| Q |
201 |
tacttagtgttcatcaattcaact |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
14304478 |
tacttagtgttcatcaattcaact |
14304455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14321069 - 14320846
Alignment:
| Q |
1 |
tccagttggagttaccctttttaggtgtttttggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||| |||| |||||||||||||||||||| ||||| ||| |
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| T |
14321069 |
tccagttggagttaccctttttaggtgtttttggaaacaaatagctttcacgggcttcattgcagtcattaggctttgtgttatgtatgttggtcccttg |
14320970 |
T |
|
| Q |
101 |
ctgattcagagttttgttgatttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcggcaaaatctgttgaag |
200 |
Q |
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||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
14320969 |
ttgattcaaagttttgttgatttcacatcaaggaaagatagtacgactagtgaaggtattgttttgatatgtgtcctttttgcagcaaaatcagttgaag |
14320870 |
T |
|
| Q |
201 |
tacttagtgttcatcaattcaact |
224 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
14320869 |
tacttagtgttcatcaatttaact |
14320846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14282920 - 14282697
Alignment:
| Q |
1 |
tccagttggagttaccctttttaggtgtttttggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| |||| | |||||||||||||||||| ||||| ||| |
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| T |
14282920 |
tccagttggagttaccctttttaggtgtttttggaaacacatagcttttacgggcttccttgcaatcattaagctttgtgttatgtatgttggtcccttg |
14282821 |
T |
|
| Q |
101 |
ctgattcagagttttgttgatttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcggcaaaatctgttgaag |
200 |
Q |
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||||| ||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
14282820 |
ttgattgagagttttgttgatttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaatcacttgaag |
14282721 |
T |
|
| Q |
201 |
tacttagtgttcatcaattcaact |
224 |
Q |
| |
|
|||||||| |||||| ||||||| |
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| T |
14282720 |
tacttagtagtcatcagttcaact |
14282697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 25885732 - 25885528
Alignment:
| Q |
20 |
tttaggtgtttttggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattgctgattcagagttttgttg |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||| | || |||||||||||||||||| | |||||| || |||||||||||||||||| |
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| T |
25885732 |
tttaggtgtttttggaaacacatagctttcactggcttccttgcaatgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttg |
25885633 |
T |
|
| Q |
120 |
atttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcggcaaaatctgttgaagtacttagtgttcatcaatt |
219 |
Q |
| |
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||||||||||| |||||||||| | ||||||||||||||| ||||||||| |||||||||| |||||||| |||||||| || ||||||||||||| |
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| T |
25885632 |
atttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttgaagtgctgagtgttcatcaata |
25885533 |
T |
|
| Q |
220 |
caact |
224 |
Q |
| |
|
||||| |
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|
| T |
25885532 |
caact |
25885528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 44349576 - 44349373
Alignment:
| Q |
20 |
tttaggtgtttttggaaacacatagttttcactggctttcttgcattcatgaggctttgtgttatgtatgtcggtccattgctgattcagagttttgttg |
119 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| |||||| | || |||||||||||||||||| | |||||| || |||||||||||||||||| |
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| T |
44349576 |
tttaggtgtttttggaaacacatagctatcactggcttccttgcagtgattaggctttgtgttatgtatattggtccactgttgattcagagttttgttg |
44349477 |
T |
|
| Q |
120 |
atttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcggcaaaatctgttgaagtacttagtgttcatcaatt |
219 |
Q |
| |
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|||| |||||| |||||||||| | |||||||||| |||| ||||||||| |||||||||| |||||||| ||||||||||| |||| |||||||| |
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| T |
44349476 |
attttacatcaaggaaagatagtactactagtgaagatattattttgatattgatcctttttgcagcaaaatcagttgaagtactgagtg-tcatcaata |
44349378 |
T |
|
| Q |
220 |
caact |
224 |
Q |
| |
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||||| |
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|
| T |
44349377 |
caact |
44349373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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