View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7959_low_3 (Length: 464)
Name: NF7959_low_3
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7959_low_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Complemental strand, 32084739 - 32084297
Alignment:
| Q |
16 |
caatccacccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaatacccattccctctgattctg |
115 |
Q |
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| T |
32084739 |
caatccacccttggtgaaacccaaactcttacggcctccaaaattgacgacattctccacaaattagcgtcccttgaaatacccattccctctaattctg |
32084640 |
T |
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| Q |
116 |
cttcccttccaccaccatccatcccttcctcctgccaaactacaatcacaatgtatgaagctcgatgtaccatgaaattttagcatcttgtagtgacctc |
215 |
Q |
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| T |
32084639 |
cttcccttccaccaccatccatcccttcctcctgccaaactacaat------gtatgaagctcgatgtaccatgaaattttagcatcttgtagtgacctc |
32084546 |
T |
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| Q |
216 |
gccattaggcttagaatttgttgtaacctgaatttgatagtgggctatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccatta |
315 |
Q |
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| T |
32084545 |
gccattaggcttagaatttgttgtaacctgaatttgatagtgggctatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccatta |
32084446 |
T |
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| Q |
316 |
ggctttgaacttgatgtgaacctgaattttatcacacataattacaattgttatgtggttactctaaaggttttagatatgattatatgatgattgtgca |
415 |
Q |
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| T |
32084445 |
ggctttgaacttgatgtgaacctgaattttatcagacataattacaattgttatgtggttactctaaaggttttaaatatgattatatgatgattgtgca |
32084346 |
T |
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| Q |
416 |
agcaaggttggttatgaaaacattttatgctatgttgtgtgtttgtcct |
464 |
Q |
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| T |
32084345 |
agcaagattggttatgaaaacattttatgctatgttgtgtgtttgtcct |
32084297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 250 - 445
Target Start/End: Complemental strand, 32085960 - 32085758
Alignment:
| Q |
250 |
tgatagtgggctatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccattaggctttgaacttgatgtgaacctgaatttta--- |
346 |
Q |
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| T |
32085960 |
tgatagtgggttgtgtaacatccctgattattagctctagctagtcttagtatcgttagtccattaggctaagaatttgttgtgaacctgaattttatat |
32085861 |
T |
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| Q |
347 |
--tcacacataattacaattgttatgtggttactctaaaggttt--tagatatgattatatgatgattgtgcaagcaaggttggttatgaaaacatttta |
442 |
Q |
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| T |
32085860 |
gttctgacttaattataattgttgtgtggttactcttaaagtatgaaatatatgattatatgattattgtgcaggcatgattgattatggaaatatttta |
32085761 |
T |
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| Q |
443 |
tgc |
445 |
Q |
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| T |
32085760 |
tgc |
32085758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 32086198 - 32086029
Alignment:
| Q |
22 |
acccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaatacccattccctctgattctgcttc-c |
120 |
Q |
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| T |
32086198 |
acccttgttgaaatccaaactctcccggcctccctaattgatgacattctccacaagttagcctcccttgacatacccactctctctg-ttatgcttctc |
32086100 |
T |
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| Q |
121 |
cttccaccaccatccatcccttcctcctgccaaactacaatcacaatgtatgaagctcgatgtaccatgaaatttta |
197 |
Q |
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| T |
32086099 |
cttccaccatcaaccatcccctcctcctaccaaac------cacaccgcatgaagctcgatgtaccatgaaatttta |
32086029 |
T |
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