View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7959_low_5 (Length: 351)
Name: NF7959_low_5
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7959_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 337
Target Start/End: Original strand, 40151284 - 40151615
Alignment:
| Q |
6 |
agaaacatagatatgatcaccagaggcctaacatttgtgtctcttatgataggaggaatacgcaagaaagacacactcatgatacctaaaatgaagttta |
105 |
Q |
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| T |
40151284 |
agaaacatagatatgatcaccagaggcctaacatttgtgtctcttatgataggaggaatacgcaagaaagacacactcatgatacctaaaatgaagttta |
40151383 |
T |
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| Q |
106 |
ttttagttgtaagaagaattgagaatatgtaaacaaaagcaaccaaataatttgagaaagttatagtcaggttgatgagaaaatatgtcggtacatcaaa |
205 |
Q |
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| T |
40151384 |
ttttagttgtaagaagaattgagaatatgtaaacaaaagcaaccaaataatttgagaaagttatagtcaggttgatgagaaaatatgtcggtacatcaaa |
40151483 |
T |
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| Q |
206 |
tgaaatgttgtaacaggaatagcaacctatttgtcttttccatgcaataggcagaacaaacaccaagctcggtttattgacaaagggtattttacattga |
305 |
Q |
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| T |
40151484 |
tgaaatgttgtaacaggaatagcaacctatttgtcttttccatgcaataggcttaacaaacaccaagctcggtttattgacaaagggtattttacattga |
40151583 |
T |
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| Q |
306 |
tttagcacaagtctttgaagatccatgtaact |
337 |
Q |
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| T |
40151584 |
tttagcacaagtctttgaagatccatgtaact |
40151615 |
T |
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