View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7959_low_7 (Length: 298)

Name: NF7959_low_7
Description: NF7959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7959_low_7
NF7959_low_7
[»] chr7 (2 HSPs)
chr7 (21-282)||(22270850-22271111)
chr7 (14-75)||(18494564-18494626)
[»] chr2 (2 HSPs)
chr2 (14-90)||(14921131-14921207)
chr2 (52-94)||(22512011-22512053)
[»] chr1 (1 HSPs)
chr1 (26-72)||(33083616-33083662)
[»] chr6 (1 HSPs)
chr6 (14-75)||(6177894-6177955)
[»] chr4 (1 HSPs)
chr4 (14-70)||(19602967-19603023)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 22271111 - 22270850
Alignment:
Q  21 agacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattttactaaaatcactatcactccacttagtagaaatcacaacaccac 120  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||    
T  22271111 agacgattaacttactaccttattactttgcacgatttgatgcacttgccaatttcactaaaatcattatcactccccttagtagaaatcataacaccac 22271012  T
Q  121 cgttcttcctccaactcctaaaggggaggttactctagttcaagggaatcaagagattcctcaagcttcaacaatcctccataattccaaccgtctttcg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22271011 cgttcttcctccaactcctaaaggggaggttactctagttcaagggaatcaagagattcctcaagcttcaacaatcctccataattccaaccgcctttcg 22270912  T
Q  221 tccatcagaacgagcaagaccaaaatcaccaagtgcgattttttcaactctcagtagcacag 282  Q
    |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22270911 ttaatcagaacgagcaagaccaaaatcaccaagtgcgattctttcaactctcagtagcacag 22270850  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 18494626 - 18494564
Alignment:
Q  14 cctgtggaga-caattaacttactaccttgttactttgcacgatttgatgcacttgccaattt 75  Q
    |||||||||| |||| ||||||||||||| ||||||   |||||||| |||||||||||||||    
T  18494626 cctgtggagaacaataaacttactaccttattacttgttacgatttggtgcacttgccaattt 18494564  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 14921207 - 14921131
Alignment:
Q  14 cctgtggagacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattttactaaaatcactat 90  Q
    |||| |||||| ||||||| | ||| || ||| |||| |||||||||||||||| |||||||  |||||||||||||    
T  14921207 cctgaggagacgattaactcattactttattattttgtacgatttgatgcacttaccaatttatctaaaatcactat 14921131  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 22512011 - 22512053
Alignment:
Q  52 acgatttgatgcacttgccaattttactaaaatcactatcact 94  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||    
T  22512011 acgatttggtgcacttgccaatttcactaaaatcaccatcact 22512053  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 33083662 - 33083616
Alignment:
Q  26 attaacttactaccttgttactttgcacgatttgatgcacttgccaa 72  Q
    |||||||||||||  | |||||||| |||||||||||||||||||||    
T  33083662 attaacttactactctattactttgtacgatttgatgcacttgccaa 33083616  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 6177894 - 6177955
Alignment:
Q  14 cctgtggagacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattt 75  Q
    |||||| ||||||  |||||||||| |||||||||   ||||||||||||||||| ||||||    
T  6177894 cctgtgaagacaaaaaacttactactttgttacttgttacgatttgatgcacttgtcaattt 6177955  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 19602967 - 19603023
Alignment:
Q  14 cctgtggagacaattaacttactaccttgttactttgcacgatttgatgcacttgcc 70  Q
    ||||||||||| ||||||||||| | || |||||| | || ||||||||||||||||    
T  19602967 cctgtggagacgattaacttactgctttattacttggtactatttgatgcacttgcc 19603023  T

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