View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_high_1 (Length: 691)
Name: NF7960_high_1
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Original strand, 24772399 - 24772888
Alignment:
| Q |
18 |
attaagatacaacaaatcaaaaggaaatacacagacatcaacctttatgttactcaccactacatcttttcttgcccgagtactaagcacctatcaagat |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24772399 |
attaagatgcaacaaatcaaaaggaaatacacagacatcaacctttatgttactcacggctacatcttttcttgcccgagtactaagcacctatcaagat |
24772498 |
T |
|
| Q |
118 |
cttaggttataacatatgcaatctcaattcttcaagaaaaataacagtaattggaaaattgaatccccgagataggtaaaacaacacttacattaaagta |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24772499 |
cttaggttataatatatgcaatctcaattcttcaagaaaaataacagtaattggaaaattgaatccccgagataggtaaaacaacacttacattaaagta |
24772598 |
T |
|
| Q |
218 |
taaaagaattttattttgattgactgccaatataaaagttcggagaactaaataatgtattgaaacatgtaaaagtaaaaaatcatcactaggattacct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24772599 |
taaaagaattttattttgattgactgccaatataaaagttcggagaactaaataatgtattgaaacatgtaaaagtaaaaaatcatcactaggattacct |
24772698 |
T |
|
| Q |
318 |
gcataggaaggattctctgtattttacgatcatatgcaacaatttcacagtctagaacaaacgatgacacatttgttttctttaacctgataatttacaa |
417 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24772699 |
gcataggaaggattctctgttttttacgatcatatgcaacaatttcacagtctagaacaaacgatgacacattttttttctttaacctgataatttacaa |
24772798 |
T |
|
| Q |
418 |
caaatatcagaaacaaggaagttgaaaatattgtactgggaagcaactgaagtccttacctcaatataatcatattctaagacgcaatat |
507 |
Q |
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| T |
24772799 |
caaatatcagaaagaaggaagttgaaaatattgtactgggaagcaactgaagtccttacctcaatataatcatattctaagacgcaatat |
24772888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 558 - 676
Target Start/End: Original strand, 24772924 - 24773042
Alignment:
| Q |
558 |
atttaaaatacatcctaaaaatatctcaacacgtcattattgtacgataaaatatatgttagactagagtatcttaaactatctcgtaggattggtttgc |
657 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
24772924 |
atttaaaatacatcctaaaaatatctcaacacgtcattactgtacgataaaatatatgttagactagcgtatcttaaactatcttgtaggattggtttgc |
24773023 |
T |
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| Q |
658 |
attatttgttatatttcat |
676 |
Q |
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| T |
24773024 |
attatttgttatatttcat |
24773042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 21002361 - 21002240
Alignment:
| Q |
310 |
gattacctgcataggaaggattctctgtattttacgatcatatgcaacaatttcacagtctagaacaaacgatgacacatttgttttctttaacctgata |
409 |
Q |
| |
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||||||||| | |||||||||||||||| || |||||||||||||||||| |||||| || || | ||| |||| ||| |||||||||||||||| | |
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| T |
21002361 |
gattacctggaaaggaaggattctctgttttgtacgatcatatgcaacaagttcacaatcaaggataaatgatgttacagatgttttctttaacctgttc |
21002262 |
T |
|
| Q |
410 |
atttacaacaaatatcagaaac |
431 |
Q |
| |
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| | ||| |||||||||||||| |
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| T |
21002261 |
agtgacagcaaatatcagaaac |
21002240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 21002658 - 21002559
Alignment:
| Q |
18 |
attaagatacaacaaatcaaaaggaaatacacagacatcaacctttatgttactcaccactacatcttttcttgcccgagtactaagcacctatcaagat |
117 |
Q |
| |
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|||||| |||||||||||||||| ||| ||||| |||||||||||||||| ||||| |||||| ||| | || || ||||||||||||| ||||||| |
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| T |
21002658 |
attaaggtacaacaaatcaaaagcaaagacacaaacatcaacctttatgtcactcaaagctacatttttgcgggcacgggtactaagcacctgtcaagat |
21002559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 452
Target Start/End: Complemental strand, 20992395 - 20992253
Alignment:
| Q |
310 |
gattacctgcataggaaggattctctgtattttacgatcatatgcaacaatttcacagtctagaacaaacgatgacacatttgttttctttaacctgata |
409 |
Q |
| |
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||||||||| | |||||||||| ||||| || | ||||||||||||||| |||||| || || | ||| ||||| || ||||||| ||||| ||| | |
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| T |
20992395 |
gattacctggaaaggaaggattgtctgttttccatgatcatatgcaacaagttcacaatcaaggataaaagatgatactgttgttttttttaatctgttc |
20992296 |
T |
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| Q |
410 |
atttacaacaaatatcagaaacaaggaagttgaaaatattgta |
452 |
Q |
| |
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|| | |||||||||||||||| | || |||||||| |||||| |
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| T |
20992295 |
gttgataacaaatatcagaaaccatgatgttgaaaaaattgta |
20992253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 20992632 - 20992578
Alignment:
| Q |
18 |
attaagatacaacaaatcaaaaggaaatacacagacatcaacctttatgttactc |
72 |
Q |
| |
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|||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||| |
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|
| T |
20992632 |
attaaggtgcaacaaatcaaaagcaaatacacaaacagcaacctttatgtcactc |
20992578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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