View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_high_11 (Length: 395)
Name: NF7960_high_11
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 209 - 340
Target Start/End: Complemental strand, 46730499 - 46730368
Alignment:
| Q |
209 |
tcacacttcctcttaccagcacaaacaatattgagcatatccataagttatatcaattattaaaagctaaattgactcctcgaaagagcattgactacgt |
308 |
Q |
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| T |
46730499 |
tcacacttcctcttaccagcacaaacaatattgagcatatccataagttatatcaactattaaaagctaaattgactcctcgaaagagcattgactacgt |
46730400 |
T |
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| Q |
309 |
ctaagaatataactcctttgaactatgtaaca |
340 |
Q |
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| T |
46730399 |
ctaagaatataactcctttgaactatgtaaca |
46730368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 46730693 - 46730588
Alignment:
| Q |
19 |
accaactctacttaaaacacatgcataactcagttactaaattttgaaactatatatacgcaagttaaattatttcctcgtatcattctcgttttcaact |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46730693 |
accaactctacttaaaacacatgcataactcagttactacattttgtaattatatatacgcaagttaaattatttcctcgtatcattctcgttttcaact |
46730594 |
T |
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| Q |
119 |
ttcaag |
124 |
Q |
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|||||| |
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| T |
46730593 |
ttcaag |
46730588 |
T |
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