View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7960_high_14 (Length: 376)
Name: NF7960_high_14
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 37 - 363
Target Start/End: Complemental strand, 31640606 - 31640280
Alignment:
| Q |
37 |
aaattctgagcactgagatggatctaatatctatggatttatagcgcgctgacacaaaccaccatattgacgctgacatgttgacacgtgtaataattta |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31640606 |
aaattctgagcactgagatggatctaatatctatggatttatagcacgctgacacaaaccaccatattgacgctgacatgttgacacgtgtaataattta |
31640507 |
T |
|
| Q |
137 |
cgaaaattgaaaacacatgtgtcagtgtttgacacgccttcaatttgaggtgttggtactacaaagttattaaactcaatcaagactagcttctgcacat |
236 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31640506 |
cgaaaattgaaaatacatgcgtcagtgtttgacacgccttcaatttgaggtgttggtactacaaagttattaaactcaatcaagactagcttctgcacat |
31640407 |
T |
|
| Q |
237 |
gaaactactaaccattctcagttatgatcactggtgtgtttccatatttacttttgacatgtttcattaattttctgattccccatgggacaatgtgtag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31640406 |
gaaactactaaccattctcagttatgatcactggtgtgtttccatatttacttttgacatgtttcattaattttctgattccccatgggacaatgtgtag |
31640307 |
T |
|
| Q |
337 |
ccaacttgaagcagcctacaagaatgt |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31640306 |
ccaacttgaagcagcctacaagaatgt |
31640280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University