View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_high_25 (Length: 329)

Name: NF7960_high_25
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_high_25
NF7960_high_25
[»] chr6 (13 HSPs)
chr6 (6-270)||(30434320-30434584)
chr6 (294-329)||(26602421-26602456)
chr6 (295-329)||(8099628-8099662)
chr6 (295-329)||(9644794-9644828)
chr6 (295-329)||(9650811-9650845)
chr6 (296-329)||(6068664-6068697)
chr6 (296-329)||(6330213-6330246)
chr6 (296-329)||(11572144-11572177)
chr6 (296-329)||(13853592-13853625)
chr6 (297-329)||(2830433-2830465)
chr6 (297-329)||(8382969-8383001)
chr6 (297-329)||(8417793-8417825)
chr6 (297-329)||(17992086-17992118)
[»] chr4 (12 HSPs)
chr4 (291-329)||(3422158-3422196)
chr4 (292-329)||(47838612-47838649)
chr4 (294-329)||(41469763-41469798)
chr4 (296-329)||(3904682-3904715)
chr4 (292-329)||(48336361-48336398)
chr4 (292-329)||(51894577-51894614)
chr4 (296-329)||(53337468-53337501)
chr4 (297-329)||(6121893-6121925)
chr4 (297-329)||(20538686-20538718)
chr4 (297-329)||(42797830-42797862)
chr4 (297-329)||(46797823-46797855)
chr4 (297-329)||(47833709-47833741)
[»] chr7 (9 HSPs)
chr7 (292-329)||(7240847-7240884)
chr7 (292-329)||(7482323-7482360)
chr7 (294-329)||(1738444-1738479)
chr7 (296-329)||(9268854-9268887)
chr7 (296-329)||(28536750-28536783)
chr7 (293-325)||(22285695-22285727)
chr7 (297-329)||(22285797-22285829)
chr7 (297-329)||(23314139-23314171)
chr7 (297-329)||(46840958-46840990)
[»] chr5 (10 HSPs)
chr5 (292-329)||(9395448-9395485)
chr5 (292-329)||(13103122-13103159)
chr5 (295-329)||(41989405-41989439)
chr5 (292-329)||(13033149-13033186)
chr5 (296-329)||(17025722-17025755)
chr5 (296-329)||(21576044-21576077)
chr5 (296-329)||(36563537-36563570)
chr5 (296-329)||(37642052-37642085)
chr5 (297-329)||(6126922-6126954)
chr5 (297-329)||(20848171-20848203)
[»] chr2 (16 HSPs)
chr2 (292-329)||(6648514-6648551)
chr2 (294-329)||(9047752-9047787)
chr2 (294-329)||(37666607-37666642)
chr2 (294-329)||(41478636-41478671)
chr2 (295-329)||(3055656-3055690)
chr2 (295-329)||(37990011-37990045)
chr2 (292-329)||(13197705-13197742)
chr2 (296-329)||(13344582-13344615)
chr2 (292-329)||(16243778-16243815)
chr2 (296-329)||(38917521-38917554)
chr2 (296-329)||(44398784-44398817)
chr2 (297-329)||(12337937-12337969)
chr2 (293-325)||(13775832-13775864)
chr2 (297-329)||(15372324-15372356)
chr2 (297-329)||(15896940-15896972)
chr2 (297-329)||(16044317-16044349)
[»] chr8 (12 HSPs)
chr8 (293-329)||(44498183-44498219)
chr8 (294-329)||(7785775-7785810)
chr8 (294-329)||(7805696-7805731)
chr8 (295-329)||(32211361-32211395)
chr8 (295-329)||(39571201-39571235)
chr8 (296-329)||(54611-54644)
chr8 (296-329)||(2890161-2890194)
chr8 (296-329)||(25600999-25601032)
chr8 (292-325)||(27422292-27422325)
chr8 (296-329)||(43199353-43199386)
chr8 (297-329)||(6552753-6552785)
chr8 (297-329)||(33289261-33289293)
[»] scaffold0482 (1 HSPs)
scaffold0482 (294-329)||(12958-12993)
[»] chr1 (12 HSPs)
chr1 (294-329)||(12483625-12483660)
chr1 (294-329)||(14984935-14984970)
chr1 (295-329)||(1050986-1051020)
chr1 (292-329)||(9981745-9981782)
chr1 (296-329)||(25694417-25694450)
chr1 (297-329)||(11796031-11796063)
chr1 (297-329)||(26471065-26471097)
chr1 (297-329)||(27159358-27159390)
chr1 (297-329)||(31842795-31842827)
chr1 (297-329)||(39401966-39401998)
chr1 (297-329)||(44668093-44668125)
chr1 (297-329)||(47777481-47777513)
[»] chr3 (14 HSPs)
chr3 (291-329)||(8817380-8817418)
chr3 (295-329)||(10298077-10298111)
chr3 (295-329)||(40690994-40691028)
chr3 (292-329)||(6013331-6013368)
chr3 (296-329)||(8437523-8437556)
chr3 (296-329)||(46208128-46208161)
chr3 (296-329)||(49823380-49823413)
chr3 (296-329)||(51406771-51406804)
chr3 (297-329)||(2787832-2787864)
chr3 (297-329)||(19557052-19557084)
chr3 (297-329)||(21295326-21295358)
chr3 (297-329)||(34080030-34080062)
chr3 (297-329)||(38964490-38964522)
chr3 (297-329)||(48340495-48340527)
[»] scaffold0464 (1 HSPs)
scaffold0464 (292-329)||(6126-6163)
[»] scaffold0204 (1 HSPs)
scaffold0204 (292-329)||(23883-23920)
[»] scaffold0009 (1 HSPs)
scaffold0009 (297-329)||(49603-49635)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 30434320 - 30434584
Alignment:
Q  6 aggaatgacatgcattttgaatcttcgaaaacactccttttctgagtcctccaccaaaagcttcaagacaactccaacggttatgggatatcaaaggaaa 105  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30434320 aggaatgacatgctttttgaatcttcgaaaaaactacttttctgagtcctccaccaaaagcttcaagacaactccaacagttatgggatatcaaaggaaa 30434419  T
Q  106 tcatggttcctcaaactaaagtttgttatttatatagcagaagcatgggtcccgggagataaaagtctgataaaggcatggtttatggttctatttaatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30434420 tcatggttcctcaaactaaagtttgttatttatatagcagaagcatgggtcccgggagataaaaggctgataaaggcatggtttatggttctatttaatg 30434519  T
Q  206 aacttcgtttttgaagatatttgaagtataccaaggaagaaaacggctgtattggaacagctcaa 270  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  30434520 aacttcgtttttgaagatatttgaagtataccaaggaagaaaactgctgtattggagcagctcaa 30434584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 26602456 - 26602421
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26602456 taatactccctccggtcctatttataagagaatttt 26602421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 8099662 - 8099628
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  8099662 aatactccctccggtcctatttataagagaatttt 8099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 9644828 - 9644794
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  9644828 aatactccctccggtcctatttataagagaatttt 9644794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 9650845 - 9650811
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  9650845 aatactccctccggtcctatttataagagaatttt 9650811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 6068697 - 6068664
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  6068697 atactccctccggtcctatttataagagaatttt 6068664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 6330246 - 6330213
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  6330246 atactccctccggtcctatttataagagaatttt 6330213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 11572144 - 11572177
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  11572144 atactccctccggtcctatttataagagaatttt 11572177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 13853592 - 13853625
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  13853592 atactccctccggtcctatttataagagaatttt 13853625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 2830465 - 2830433
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  2830465 tactccctccggtcctatttataagagaatttt 2830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 8382969 - 8383001
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  8382969 tactccctccggtcctatttataagagaatttt 8383001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 8417793 - 8417825
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  8417793 tactcccttcggtcctatttataagagaatttt 8417825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 17992118 - 17992086
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  17992118 tactcccttcggtcctatttataagagaatttt 17992086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 3422196 - 3422158
Alignment:
Q  291 taataatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3422196 taataatactccctccggtcctatttataagagaatttt 3422158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 47838612 - 47838649
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  47838612 aataatactccctccggtcctatttataagagaatttt 47838649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 41469763 - 41469798
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41469763 taatactccctccggtcctatttataagagaatttt 41469798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 3904682 - 3904715
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  3904682 atactccctccggtcctatttataagagaatttt 3904715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 48336398 - 48336361
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  48336398 aataatactccctccggtcctatttataagaaaatttt 48336361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 51894577 - 51894614
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  51894577 aatattactccctccggtcctatttataagagaatttt 51894614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 53337501 - 53337468
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  53337501 atactccctccggtcctatttataagagaatttt 53337468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 6121893 - 6121925
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  6121893 tactccctccggtcctatttataagagaatttt 6121925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 20538686 - 20538718
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  20538686 tactccctccggtcctatttataagagaatttt 20538718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 42797862 - 42797830
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  42797862 tactccctccggtcctatttataagagaatttt 42797830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 46797855 - 46797823
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  46797855 tactccctccggtcctatttataagagaatttt 46797823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 47833741 - 47833709
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  47833741 tactccctccggtcctatttataagagaatttt 47833709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 7240884 - 7240847
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7240884 aataatactccctccggtcctatttataagagaatttt 7240847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 7482360 - 7482323
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7482360 aataatactccctccggtcctatttataagagaatttt 7482323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 1738444 - 1738479
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1738444 taatactccctccggtcctatttataagagaatttt 1738479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 9268887 - 9268854
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  9268887 atactccctccggtcctatttataagagaatttt 9268854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 28536750 - 28536783
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  28536750 atactccctccggtcctatttataagagaatttt 28536783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 22285695 - 22285727
Alignment:
Q  293 ataatactccctacggtcctatttataagagaa 325  Q
    |||||||||||| ||||||||||||||||||||    
T  22285695 ataatactccctccggtcctatttataagagaa 22285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 22285829 - 22285797
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  22285829 tactccctccggtcctatttataagagaatttt 22285797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 23314139 - 23314171
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  23314139 tactccctccggtcctatttataagagaatttt 23314171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 46840990 - 46840958
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  46840990 tactccctccggtcctatttataagagaatttt 46840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 9395485 - 9395448
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  9395485 aataatactccctccggtcctatttataagagaatttt 9395448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 13103159 - 13103122
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  13103159 aataatactccctccggtcctatttataagagaatttt 13103122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 41989405 - 41989439
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  41989405 aatactccctccggtcctatttataagagaatttt 41989439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 13033186 - 13033149
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| || |||||||||||||||||||||    
T  13033186 aataatactccctccgatcctatttataagagaatttt 13033149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 17025755 - 17025722
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  17025755 atactccctccggtcctatttataagagaatttt 17025722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 21576077 - 21576044
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  21576077 atactccctccggtcctatttataagagaatttt 21576044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 36563537 - 36563570
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  36563537 atactccctccggtcctatttataagagaatttt 36563570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 37642085 - 37642052
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  37642085 atactccctccggtcctatttataagagaatttt 37642052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 6126954 - 6126922
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  6126954 tactccctccggtcctatttataagagaatttt 6126922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 20848203 - 20848171
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  20848203 tactccctccggtcctatttataagagaatttt 20848171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 6648514 - 6648551
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  6648514 aataatactccctccggtcctatttataagagaatttt 6648551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 9047752 - 9047787
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9047752 taatactccctccggtcctatttataagagaatttt 9047787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 37666607 - 37666642
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37666607 taatactccctccggtcctatttataagagaatttt 37666642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 41478636 - 41478671
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41478636 taatactccctccggtcctatttataagagaatttt 41478671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 3055690 - 3055656
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  3055690 aatactccctccggtcctatttataagagaatttt 3055656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 37990011 - 37990045
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  37990011 aatactccctccggtcctatttataagagaatttt 37990045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 13197705 - 13197742
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  13197705 aatactactccctccggtcctatttataagagaatttt 13197742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 13344615 - 13344582
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  13344615 atactccctccggtcctatttataagagaatttt 13344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 16243778 - 16243815
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  16243778 aataatactccatccggtcctatttataagagaatttt 16243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 38917521 - 38917554
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  38917521 atactccctccggtcctatttataagagaatttt 38917554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 44398817 - 44398784
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  44398817 atactccctccggtcctatttataagagaatttt 44398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 12337937 - 12337969
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  12337937 tactccctccggtcctatttataagagaatttt 12337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 13775864 - 13775832
Alignment:
Q  293 ataatactccctacggtcctatttataagagaa 325  Q
    |||||||||||| ||||||||||||||||||||    
T  13775864 ataatactccctccggtcctatttataagagaa 13775832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 15372356 - 15372324
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  15372356 tactccctccggtcctatttataagagaatttt 15372324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 15896972 - 15896940
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  15896972 tactccctccggtcctatttataagagaatttt 15896940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 16044317 - 16044349
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  16044317 tactccctccggtcctatttataagagaatttt 16044349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 44498183 - 44498219
Alignment:
Q  293 ataatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44498183 ataatactccctccggtcctatttataagagaatttt 44498219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 7785775 - 7785810
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7785775 taatactccctccggtcctatttataagagaatttt 7785810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 7805696 - 7805731
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7805696 taatactccctccggtcctatttataagagaatttt 7805731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 32211361 - 32211395
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  32211361 aatactccctccggtcctatttataagagaatttt 32211395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 39571201 - 39571235
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  39571201 aatactccctccggtcctatttataagagaatttt 39571235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 54611 - 54644
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  54611 atactccctccggtcctatttataagagaatttt 54644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 2890161 - 2890194
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  2890161 atactccctccggtcctatttataagagaatttt 2890194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 25600999 - 25601032
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  25600999 atactccctccggtcctatttataagagaatttt 25601032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 27422325 - 27422292
Alignment:
Q  292 aataatactccctacggtcctatttataagagaa 325  Q
    ||||||||||||| ||||||||||||||||||||    
T  27422325 aataatactcccttcggtcctatttataagagaa 27422292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 43199353 - 43199386
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  43199353 atactccctccggtcctatttataagagaatttt 43199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 6552785 - 6552753
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  6552785 tactccctccggtcctatttataagagaatttt 6552753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 33289261 - 33289293
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  33289261 tactccctccggtcctatttataagagaatttt 33289293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 12993 - 12958
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12993 taatactccctccggtcctatttataagagaatttt 12958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 12483625 - 12483660
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12483625 taatactccctccggtcctatttataagagaatttt 12483660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 14984970 - 14984935
Alignment:
Q  294 taatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14984970 taatactccctccggtcctatttataagagaatttt 14984935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 1051020 - 1050986
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  1051020 aatactccctccggtcctatttataagagaatttt 1050986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 9981782 - 9981745
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  9981782 aataatattccctccggtcctatttataagagaatttt 9981745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 25694450 - 25694417
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  25694450 atactccctccggtcctatttataagagaatttt 25694417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 11796063 - 11796031
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  11796063 tactccctccggtcctatttataagagaatttt 11796031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 26471065 - 26471097
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  26471065 tactccctccggtcctatttataagagaatttt 26471097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 27159358 - 27159390
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  27159358 tactccctccggtcctatttataagagaatttt 27159390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 31842795 - 31842827
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  31842795 tactccctccggtcctatttataagagaatttt 31842827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 39401966 - 39401998
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  39401966 tactccctccggtcctatttataagagaatttt 39401998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 44668093 - 44668125
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  44668093 tactccctccggtcctatttataagagaatttt 44668125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 47777481 - 47777513
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  47777481 tactccctccggtcctatttataagagaatttt 47777513  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 8817380 - 8817418
Alignment:
Q  291 taataatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  8817380 taataatactccttccggtcctatttataagagaatttt 8817418  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 10298111 - 10298077
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  10298111 aatactccctccggtcctatttataagagaatttt 10298077  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 40690994 - 40691028
Alignment:
Q  295 aatactccctacggtcctatttataagagaatttt 329  Q
    |||||||||| ||||||||||||||||||||||||    
T  40690994 aatactccctccggtcctatttataagagaatttt 40691028  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 6013331 - 6013368
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  6013331 aatattactccctccggtcctatttataagagaatttt 6013368  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 8437556 - 8437523
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  8437556 atactccctccggtcctatttataagagaatttt 8437523  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 46208161 - 46208128
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  46208161 atactccctccggtcctatttataagagaatttt 46208128  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 49823380 - 49823413
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  49823380 atactccctccggtcctatttataagagaatttt 49823413  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 51406804 - 51406771
Alignment:
Q  296 atactccctacggtcctatttataagagaatttt 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  51406804 atactccctccggtcctatttataagagaatttt 51406771  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 2787832 - 2787864
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  2787832 tactccctccggtcctatttataagagaatttt 2787864  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 19557052 - 19557084
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  19557052 tactccctccggtcctatttataagagaatttt 19557084  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 21295326 - 21295358
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  21295326 tactccctccggtcctatttataagagaatttt 21295358  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 34080030 - 34080062
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  34080030 tactccctccggtcctatttataagagaatttt 34080062  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 38964522 - 38964490
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  38964522 tactccctccggtcctatttataagagaatttt 38964490  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 48340527 - 48340495
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  48340527 tactccctccggtcctatttataagagaatttt 48340495  T

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Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 6126 - 6163
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  6126 aataatactccctccggtcctatttataagaaaatttt 6163  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 23920 - 23883
Alignment:
Q  292 aataatactccctacggtcctatttataagagaatttt 329  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  23920 aataatactccctccggtcctatttataagaaaatttt 23883  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 49635 - 49603
Alignment:
Q  297 tactccctacggtcctatttataagagaatttt 329  Q
    |||||||| ||||||||||||||||||||||||    
T  49635 tactccctccggtcctatttataagagaatttt 49603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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