View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_high_29 (Length: 304)
Name: NF7960_high_29
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 5381941 - 5382212
Alignment:
| Q |
17 |
taaggtatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattctcataactcatgattttgaacctctggtaag |
116 |
Q |
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| T |
5381941 |
taaggtatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattctcataactcatgattttgaacctctggtacg |
5382040 |
T |
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| Q |
117 |
ttagttctctgccttctttttggcaataaaaaataccattacttcactattgcata-ttcatctgtctatatatctttcaat-nnnnnnnnnntcaatta |
214 |
Q |
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| T |
5382041 |
ttagttctctgccttctttttggcaataaaaaataccattacttcactattgcatatttcatctgtctatatatctttcaataaaaataaaaataaatta |
5382140 |
T |
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| Q |
215 |
atttaagtggatgtggacatactttaagtttacttaccaaaagacgaaggccgtgaatctgaagtgtgtttc |
286 |
Q |
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| T |
5382141 |
atttaagtggatgtggacatactttaagtttacttaccaaaagacgaaggccgtgaatctgaagtgtgtttc |
5382212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 42744281 - 42744198
Alignment:
| Q |
22 |
tatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattctcataactcatgattttgaa |
105 |
Q |
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| T |
42744281 |
tatcttcatgaagaatgcagagttggttgcattgtacaccgtgatttgcggcctaacaatatcctcctcactcatgattttgaa |
42744198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 43071758 - 43071666
Alignment:
| Q |
22 |
tatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattctcataactcatgattttgaacctctggta |
114 |
Q |
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| T |
43071758 |
tatcttcatgaagagtgcagggtgggatgcattgttcaccgtgacatgcggcctaacaacattcttatcactcatgattttgagccactggta |
43071666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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