View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_high_34 (Length: 285)

Name: NF7960_high_34
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_high_34
NF7960_high_34
[»] chr5 (14 HSPs)
chr5 (15-270)||(10764583-10764838)
chr5 (53-256)||(10610227-10610430)
chr5 (50-257)||(10563543-10563750)
chr5 (50-171)||(10748501-10748622)
chr5 (53-168)||(10603358-10603473)
chr5 (50-126)||(10218232-10218308)
chr5 (53-255)||(7191523-7191725)
chr5 (95-180)||(10718429-10718514)
chr5 (63-165)||(10579615-10579717)
chr5 (63-165)||(10589926-10590028)
chr5 (137-258)||(10742272-10742396)
chr5 (68-168)||(10599693-10599793)
chr5 (50-168)||(9837814-9837932)
chr5 (209-249)||(10653847-10653887)
[»] chr2 (1 HSPs)
chr2 (42-270)||(17924881-17925112)
[»] chr6 (5 HSPs)
chr6 (42-259)||(12930790-12931010)
chr6 (42-269)||(12956582-12956812)
chr6 (42-260)||(12947154-12947375)
chr6 (21-260)||(12898078-12898321)
chr6 (42-250)||(12905710-12905921)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 10764583 - 10764838
Alignment:
15 tattaacagctatggaaagcgcatgttgtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10764583 tattaacagctatggaaagcgcatgttgtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttc 10764682  T
115 caaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcattt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
10764683 caaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagaagcattt 10764782  T
215 gcaatcgaaacagggattgtacctgagaattgatttcctccaaaatttaatatttt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10764783 gcaatcgaaacagggattgtacctgagaattgatttcctccaaaatttaatatttt 10764838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 256
Target Start/End: Complemental strand, 10610430 - 10610227
Alignment:
53 tttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagac 152  Q
    ||||||||||||||||||||||||||||| || || ||||||| ||| |||| ||| | ||||||| | ||| ||  ||||| | |||| ||| ||||||    
10610430 tttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagtaaagatctggtaacttctctagac 10610331  T
153 ttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacctgagaattgatttcc 252  Q
    ||||||||||||||||||| ||||||   ||||  || | || ||||| |  ||| ||||||||||| ||||||||||||| ||||||||||||||||||    
10610330 ttggaacttgtccaaccaaattgttttgacctaaatcaattatttgtagggaagaagcatttgcaatggaaacagggattggacctgagaattgatttcc 10610231  T
253 tcca 256  Q
    ||||    
10610230 tcca 10610227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 257
Target Start/End: Complemental strand, 10563750 - 10563543
Alignment:
50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 149  Q
    |||||||||||||| ||||||||||||||||| ||  | ||||||| |||||||||||| | | | ||| ||||| ||  ||||| |||||| ||| |||    
10563750 caatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgtaacttctcta 10563651  T
150 gacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacctgagaattgatt 249  Q
    |||||||||||||||| ||||| | ||||    ||| ||| |||| ||||| |  ||| |||||| |||| |||| |||||||| |||||||||||||||    
10563650 gacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggacctgagaattgatt 10563551  T
250 tcctccaa 257  Q
    | ||||||    
10563550 tgctccaa 10563543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 10748501 - 10748622
Alignment:
50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 149  Q
    |||||||||||||| ||||||||||||||||| || || ||||||| ||| |||| ||| ||||||||||||||| ||  ||||| |||||| ||| |||    
10748501 caatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatcttgtaacttctcta 10748600  T
150 gacttggaacttgtccaaccaa 171  Q
    ||||||||||||| || |||||    
10748601 gacttggaacttgccccaccaa 10748622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 10603473 - 10603358
Alignment:
53 tttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagac 152  Q
    ||||||||  ||||||||||||| ||||| ||||| || |||||||||||| ||||   |||||||||||||||   ||||| || ||  ||||||||||    
10603473 tttgtcaatgattttaaaaactccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagac 10603374  T
153 ttggaacttgtccaac 168  Q
    ||||||||||||||||    
10603373 ttggaacttgtccaac 10603358  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 10218232 - 10218308
Alignment:
50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 126  Q
    |||||||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | ||||||| |||||||    
10218232 caatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaa 10218308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 7191725 - 7191523
Alignment:
53 tttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagac 152  Q
    ||||||||  |||||||||||||||||||| | |||||||||| ||||||| |||||   || | ||||| |   | |||||  ||||| ||||||||||    
7191725 tttgtcaaggattttaaaaactctaaatccttagtggaattgttacctaaactgtttagctctagatttaaccgtcgaagatcatgtaacttccctagac 7191626  T
153 ttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacctgagaattgatttcc 252  Q
    ||||||||||||| ||||| ||||||    ||| ||| ||      || |  ||| ||||||| ||| |||| |||||||||||||||||||||||||||    
7191625 ttggaacttgtccgaccaaattgttttgatctaagtcaagattaaatagggaagaagcatttgaaatggaaatagggattgtacctgagaattgatttcc 7191526  T
253 tcc 255  Q
    |||    
7191525 tcc 7191523  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 10718429 - 10718514
Alignment:
95 tcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatttgtttgt 180  Q
    |||||||||||||||  || ||||||||| || | ||||| |||||| | ||||| ||||||||||||||||||||| ||||||||    
10718429 tcacctaaattgtttgattgcaaatttagaaatcgaagattttgtaactcccctatacttggaacttgtccaaccaaattgtttgt 10718514  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 10579717 - 10579615
Alignment:
63 attttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttg 162  Q
    |||||||||||||||||||| |  |||||||||||||||| ||||| |||| |||| ||||| | | ||| |  ||||  |||||||||| |||||||||    
10579717 attttaaaaactctaaatccttactggaattgtcacctaatttgttatcttgcaaacttagcgaccaaagtttctgtagcttccctagacatggaacttg 10579618  T
163 tcc 165  Q
    |||    
10579617 tcc 10579615  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 10589926 - 10590028
Alignment:
63 attttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttg 162  Q
    |||||||||||||||||||| |  |||||||||||||||| ||||| |||| |||| ||||| | | ||| |  ||||  |||||||||| |||||||||    
10589926 attttaaaaactctaaatccttactggaattgtcacctaatttgttatcttgcaaacttagcgaccaaagtttctgtagcttccctagacatggaacttg 10590025  T
163 tcc 165  Q
    |||    
10590026 tcc 10590028  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 10742272 - 10742396
Alignment:
137 tgtaaattccctagacttggaacttgtccaaccaatttgttt-gttc--ctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattg 233  Q
    ||||| ||||| ||| ||||||||||||||||||| |||||| | ||  |||  || ||| |||||| | |||| ||||||||||| |||| ||||||||    
10742272 tgtaacttcccaagatttggaacttgtccaaccaaattgttttgatcacctaaatcaagtgattgtaaggcagaagcatttgcaatggaaatagggattg 10742371  T
234 tacctgagaattgatttcctccaaa 258  Q
     ||||| |||||||||| |||||||    
10742372 gacctgtgaattgatttactccaaa 10742396  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 10599793 - 10599693
Alignment:
68 aaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaa 167  Q
    |||||||  ||||||||||| ||  ||||||||||| ||||   |||||||||||||||   ||||| || ||  |||||||||||||||||||||||||    
10599793 aaaaactgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaa 10599694  T
168 c 168  Q
    |    
10599693 c 10599693  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 9837814 - 9837932
Alignment:
50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 149  Q
    |||||||||| |  ||| |||||| |||||||| | || ||||||||||||| | ||||   ||| | |||||||||   ||||| |||||  |||||||    
9837814 caatttgtcatagttttcaaaaaccctaaatccttagttgaattgtcacctagaatgttcatttcaagatttagcaaattaagatcttgtagcttcccta 9837913  T
150 gacttggaacttgtccaac 168  Q
    |||||||||||||||||||    
9837914 gacttggaacttgtccaac 9837932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 10653847 - 10653887
Alignment:
209 gcatttgcaatcgaaacagggattgtacctgagaattgatt 249  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
10653847 gcatttgcaatggaaatagggattgtacctgagaattgatt 10653887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 42 - 270
Target Start/End: Original strand, 17924881 - 17925112
Alignment:
42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| | |  ||| | ||||||    
17924881 gtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgtaa 17924980  T
142 attccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||||||||||||||||||||||||||| |   |||||  |  || ||||| || ||||| | |||| || ||||||||||||| |||||||| ||||    
17924981 attccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggacct 17925080  T
239 gagaattgatttcctccaaaatttaatatttt 270  Q
    ||||||||||||||| ||||||  ||||||||    
17925081 gagaattgatttcctgcaaaatcaaatatttt 17925112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 42 - 259
Target Start/End: Complemental strand, 12931010 - 12930790
Alignment:
42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||  |||||||| |||| |||  ||||| ||||||    
12931010 gtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttccaaacttaggaaggaaagatcttgtaa 12930911  T
142 attccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||  ||||||||||||||||||||||| |   ||||  |||||| ||||| || ||||| | |||| |||||||||||||||  |||||||| ||||    
12930910 attcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagcatttgcaatcgaagtagggattggacct 12930811  T
239 gagaattgatttcctccaaaa 259  Q
    |||||||||||| || |||||    
12930810 gagaattgatttgctgcaaaa 12930790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 42 - 269
Target Start/End: Complemental strand, 12956812 - 12956582
Alignment:
42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||| ||||||||||||| ||| ||||||||||| || ||| ||| |||||||||||||  || |||||||||   |  ||| | ||||||    
12956812 gtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaaggtcttgtaa 12956713  T
142 attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||||||||||||||||||||||||||| ||   |||   ||||| ||||| || ||||| | |||| |||||||||||||||| |||||||| ||||    
12956712 attccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagcatttgcaatcgaaatagggattggacct 12956613  T
239 gagaattgatttcctccaaaatttaatattt 269  Q
    |||||||||||| || ||||||  |||||||    
12956612 gagaattgatttgctgcaaaatcgaatattt 12956582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 260
Target Start/End: Complemental strand, 12947375 - 12947154
Alignment:
42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||| ||||| || ||| ||| ||||||||||||   ||||||| |||| |||  ||||| ||||||    
12947375 gtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaacttaggaaggaaagatcttgtaa 12947276  T
142 attccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||  ||||||||||||||||||||||| |   ||||   ||||| ||||| |  ||||| | |||| ||||||||||| |||| ||| |||| ||||    
12947275 attcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagcatttgcaattgaaataggaattggacct 12947176  T
239 gagaattgatttcctccaaaat 260  Q
    |||||||||||| |||||||||    
12947175 gagaattgatttgctccaaaat 12947154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 12898321 - 12898078
Alignment:
21 cagctatggaaagcgcatgttgtttgctgcaatttgtcaaatattttaaaaactctaaa-tccattgtggaattgtcacctaaattgttttcttccaaat 119  Q
    ||||||| |||||| ||| | |||| |||||||||||||||||||||||||| |||||| ||||| || ||| ||| ||||||||||||   | |||||     
12898321 cagctatcgaaagcacatttagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaac 12898222  T
120 ttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgc 216  Q
    |||| | |  ||||| |||||||||||||||||||||||||||||||||||| |   |||||  |  || ||||| || ||||| |  ||| ||||| ||    
12898221 ttagaatggaaagattttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagc 12898122  T
217 aatcgaaacagggattgtacctgagaattgatttcctccaaaat 260  Q
    |||||||| ||| |||| ||| ||||||||||||||||||||||    
12898121 aatcgaaataggaattggaccagagaattgatttcctccaaaat 12898078  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 12905921 - 12905710
Alignment:
42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||||||| | || ||| ||| ||||||||||||   | ||||| |||| | |  ||||| ||||||    
12905921 gtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgtaa 12905822  T
142 attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||||||||||||||||||||||||||| ||   |||| ||  || ||||| || ||||| | |||| |||||  ||||||||| |||||||| |||     
12905821 attccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagcattatcaatcgaaatagggattggacca 12905722  T
239 gagaattgattt 250  Q
    ||||||||||||    
12905721 gagaattgattt 12905710  T

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