View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_high_39 (Length: 241)

Name: NF7960_high_39
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_high_39
NF7960_high_39
[»] chr7 (4 HSPs)
chr7 (101-225)||(25847588-25847712)
chr7 (1-95)||(25847366-25847460)
chr7 (2-83)||(25833124-25833205)
chr7 (101-194)||(25833358-25833447)
[»] chr5 (2 HSPs)
chr5 (175-212)||(11684519-11684556)
chr5 (169-201)||(15246946-15246978)
[»] chr4 (1 HSPs)
chr4 (166-211)||(18512430-18512475)
[»] chr2 (2 HSPs)
chr2 (166-195)||(29430868-29430897)
chr2 (166-194)||(40837369-40837397)
[»] chr1 (2 HSPs)
chr1 (166-207)||(14559082-14559123)
chr1 (166-194)||(29793630-29793658)
[»] chr8 (1 HSPs)
chr8 (169-205)||(41589699-41589735)
[»] chr3 (3 HSPs)
chr3 (169-201)||(18405756-18405788)
chr3 (169-205)||(41033177-41033213)
chr3 (166-214)||(41848628-41848676)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 25847588 - 25847712
Alignment:
Q  101 cataaatttagagtatcaccatgacatgcatgcaatctagacatatcacactttttcacaaatgttgtttatgtcagtagataagctcaaataaactaat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  25847588 cataaatttggagtatcaccatgacatgcatgcaatctagacatatcgcaccttttcacaaatgttgtttatgtcagtagataaactcaaataaattaat 25847687  T
Q  201 ctaaatagacccaatatgataaatc 225  Q
    |||||||| ||||||||||||||||    
T  25847688 ctaaatagtcccaatatgataaatc 25847712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25847366 - 25847460
Alignment:
Q  1 atatatattcaagtgtcgtagtggtgagtgtgttaaaattaaaatataaaaatgtcaaactaagaagaattgtgttcgcaaaagaattgtacaat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25847366 atatatattcaagtgtcgtagtggtgagtgtgttaaaattaaaatataaaaatgtcaaactaagaagaattgtgttcgcaaaagaattgtacaat 25847460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 25833124 - 25833205
Alignment:
Q  2 tatatattcaagtgtcgtagtggtgagtgtgttaaaattaaaatataaaaatgtcaaactaagaagaattgtgttcgcaaaa 83  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  25833124 tatatactcaagtgtcgtaatggtgagtgtgtaaaaattaaaatataaacatgtcaaactaagaagaattgcgttagcaaaa 25833205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 25833358 - 25833447
Alignment:
Q  101 cataaatttagagtatcaccatgacatgcatgcaatctagacatatcacactttttcacaaatgttgtttatgtcagtagataagctcaaataa 194  Q
    ||||||||| ||||||||||||||||||    |||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||    
T  25833358 cataaatttggagtatcaccatgacatg----caatctagacatattacaccttttcacaaatgttgtttatgttagtagataagttcaaataa 25833447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 11684519 - 11684556
Alignment:
Q  175 cagtagataagctcaaataaactaatctaaatagaccc 212  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  11684519 cagtagataagctcaaataaaccaatctaaacagaccc 11684556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 15246946 - 15246978
Alignment:
Q  169 ttatgtcagtagataagctcaaataaactaatc 201  Q
    |||||||||||||||||||||||||||| ||||    
T  15246946 ttatgtcagtagataagctcaaataaacaaatc 15246978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 18512475 - 18512430
Alignment:
Q  166 tgtttatgtcagtagataagctcaaataaactaatctaaatagacc 211  Q
    |||||||||||||||||||||||||||||  ||||| ||| |||||    
T  18512475 tgtttatgtcagtagataagctcaaataagttaatcgaaacagacc 18512430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 29430868 - 29430897
Alignment:
Q  166 tgtttatgtcagtagataagctcaaataaa 195  Q
    ||||||||||||||||||||||||||||||    
T  29430868 tgtttatgtcagtagataagctcaaataaa 29430897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 40837397 - 40837369
Alignment:
Q  166 tgtttatgtcagtagataagctcaaataa 194  Q
    |||||||||||||||||||||||||||||    
T  40837397 tgtttatgtcagtagataagctcaaataa 40837369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 14559082 - 14559123
Alignment:
Q  166 tgtttatgtcagtagataagctcaaataaactaatctaaata 207  Q
    ||||||||||||||||||| ||||||||| |||||| |||||    
T  14559082 tgtttatgtcagtagataacctcaaataagctaatccaaata 14559123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 29793658 - 29793630
Alignment:
Q  166 tgtttatgtcagtagataagctcaaataa 194  Q
    |||||||||||||||||||||||||||||    
T  29793658 tgtttatgtcagtagataagctcaaataa 29793630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 41589699 - 41589735
Alignment:
Q  169 ttatgtcagtagataagctcaaataaactaatctaaa 205  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  41589699 ttatgtcagtagacaagctcaaataaaccaatctaaa 41589735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 18405788 - 18405756
Alignment:
Q  169 ttatgtcagtagataagctcaaataaactaatc 201  Q
    |||||||||||||||||||||||||||| ||||    
T  18405788 ttatgtcagtagataagctcaaataaaccaatc 18405756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 41033213 - 41033177
Alignment:
Q  169 ttatgtcagtagataagctcaaataaactaatctaaa 205  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  41033213 ttatgtcagtagataaactcaaataaaccaatctaaa 41033177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 41848676 - 41848628
Alignment:
Q  166 tgtttatgtcagtagataagctcaaataaactaatctaaatagacccaa 214  Q
    ||||||||| ||||||||| |||||||||   |||||||||||||||||    
T  41848676 tgtttatgttagtagataaactcaaataagtcaatctaaatagacccaa 41848628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University