View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7960_high_49 (Length: 221)
Name: NF7960_high_49
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_high_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 38129545 - 38129404
Alignment:
| Q |
22 |
attatacattggaaccctgctattttttccaatttctttttatgtttgtgctagtttcgacatcgtcgattagagtcaagtgtatgatttcactataatt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38129545 |
attatacattggaaccctgctattttttccaatttctttttatgtttgtgctagtttcgacatcgtcgattagtgtcaagtgtatgatttcactataatt |
38129446 |
T |
|
| Q |
122 |
gacaattacattatatatattacatatcctatcttggaaccc |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38129445 |
gacaattacattatatatattacatatcctatcttagaaccc |
38129404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 38129594 - 38129542
Alignment:
| Q |
77 |
ttcgacatcgtcgattagagtcaagtgtatgatttcactataattgacaatta |
129 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||| ||||||| |||||| |
|
|
| T |
38129594 |
ttcgacatcgtcgattagtgtatagcgtatgatttcacaataattgccaatta |
38129542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University