View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_high_52 (Length: 203)
Name: NF7960_high_52
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 3617628 - 3617807
Alignment:
| Q |
9 |
agtgagatgaattatatattttgaaattattgtgactatgttttggattttcaattttgtaagaacttgggaatctagctcttttcttagttctaggact |
108 |
Q |
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| T |
3617628 |
agtgaaattaattatatattttgaaattattgtgactatgttttggattttcaattttgtaagaacttgggaatctagcttttttcttagttctaggact |
3617727 |
T |
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| Q |
109 |
aagcctaattgaatctctctttggttttcatcactcttgtggtgtaagaagtgtatattccactccaatatttgatgttat |
189 |
Q |
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| T |
3617728 |
aagcctaattgaatctctctttggttttcaacactcttgtggtgtaagaagtgtatattccactccaata-ttgatgttat |
3617807 |
T |
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