View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_high_7 (Length: 455)

Name: NF7960_high_7
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_high_7
NF7960_high_7
[»] chr1 (32 HSPs)
chr1 (125-324)||(17977419-17977620)
chr1 (125-322)||(17976761-17976962)
chr1 (125-321)||(27816580-27816778)
chr1 (125-324)||(27815439-27815640)
chr1 (129-221)||(13074224-13074315)
chr1 (266-325)||(9774890-9774950)
chr1 (133-221)||(48857052-48857140)
chr1 (266-324)||(37395631-37395690)
chr1 (266-327)||(20723690-20723752)
chr1 (266-323)||(27264218-27264276)
chr1 (266-323)||(35721100-35721158)
chr1 (266-322)||(20722472-20722529)
chr1 (266-323)||(35910652-35910709)
chr1 (266-333)||(27262897-27262965)
chr1 (266-324)||(26863858-26863917)
chr1 (266-324)||(35911890-35911949)
chr1 (266-323)||(34934749-34934807)
chr1 (266-322)||(11711256-11711312)
chr1 (266-322)||(37396842-37396899)
chr1 (266-322)||(46075052-46075109)
chr1 (266-326)||(47038862-47038923)
chr1 (269-322)||(24609919-24609973)
chr1 (266-323)||(35722287-35722345)
chr1 (266-323)||(39163026-39163084)
chr1 (274-323)||(45979506-45979556)
chr1 (266-323)||(46073884-46073942)
chr1 (268-317)||(51240124-51240174)
chr1 (266-322)||(23469971-23470028)
chr1 (266-322)||(26865186-26865243)
chr1 (266-317)||(9774042-9774094)
chr1 (266-329)||(11710546-11710610)
chr1 (268-323)||(48334136-48334192)
[»] chr4 (23 HSPs)
chr4 (125-334)||(17326594-17326805)
chr4 (125-221)||(17321045-17321141)
chr4 (129-221)||(16574232-16574324)
chr4 (269-324)||(3880501-3880557)
chr4 (129-205)||(34660643-34660719)
chr4 (129-221)||(44705407-44705499)
chr4 (266-323)||(19674413-19674471)
chr4 (266-315)||(45618292-45618342)
chr4 (266-326)||(16573374-16573435)
chr4 (266-322)||(22204055-22204112)
chr4 (271-323)||(41933817-41933870)
chr4 (266-322)||(42359348-42359405)
chr4 (266-302)||(17281592-17281628)
chr4 (266-302)||(17370094-17370130)
chr4 (266-302)||(17371847-17371883)
chr4 (266-302)||(40198595-40198631)
chr4 (266-324)||(33137230-33137289)
chr4 (266-323)||(3879085-3879143)
chr4 (269-322)||(32699319-32699373)
chr4 (272-302)||(35054683-35054713)
chr4 (273-322)||(44705299-44705349)
chr4 (292-332)||(30046761-30046802)
chr4 (292-332)||(30061102-30061143)
[»] chr2 (17 HSPs)
chr2 (126-221)||(20245166-20245261)
chr2 (129-221)||(25283136-25283228)
chr2 (129-221)||(29794178-29794270)
chr2 (266-324)||(25979253-25979312)
chr2 (266-328)||(1777463-1777526)
chr2 (266-325)||(8809593-8809654)
chr2 (266-323)||(20245307-20245366)
chr2 (266-323)||(2412430-2412488)
chr2 (266-323)||(25977869-25977927)
chr2 (266-322)||(1778792-1778849)
chr2 (266-322)||(25283274-25283331)
chr2 (266-309)||(36837780-36837824)
chr2 (266-322)||(11088682-11088739)
chr2 (271-323)||(19603737-19603790)
chr2 (266-317)||(4040218-4040270)
chr2 (266-317)||(8810705-8810757)
chr2 (268-323)||(29794321-29794376)
[»] chr3 (23 HSPs)
chr3 (125-323)||(47433673-47433869)
chr3 (266-323)||(39820606-39820664)
chr3 (129-205)||(976899-976975)
chr3 (129-205)||(20488483-20488559)
chr3 (266-324)||(52401015-52401074)
chr3 (266-324)||(53121300-53121359)
chr3 (269-323)||(54437472-54437527)
chr3 (269-326)||(40477379-40477437)
chr3 (266-323)||(52403126-52403184)
chr3 (268-317)||(52707541-52707591)
chr3 (266-322)||(52708619-52708676)
chr3 (266-302)||(11914835-11914871)
chr3 (266-317)||(20488371-20488423)
chr3 (269-323)||(46026075-46026130)
chr3 (129-186)||(4707336-4707393)
chr3 (266-326)||(39819308-39819369)
chr3 (266-322)||(46104343-46104400)
chr3 (266-317)||(20489360-20489412)
chr3 (268-323)||(20585648-20585704)
chr3 (266-317)||(22508740-22508792)
chr3 (272-323)||(42446525-42446577)
chr3 (266-302)||(45267326-45267362)
chr3 (266-302)||(45268572-45268608)
[»] chr7 (21 HSPs)
chr7 (323-436)||(19761772-19761883)
chr7 (125-316)||(43869772-43869965)
chr7 (266-323)||(31848146-31848204)
chr7 (266-323)||(32197911-32197969)
chr7 (266-326)||(24195603-24195664)
chr7 (266-326)||(41693641-41693702)
chr7 (266-317)||(32544776-32544828)
chr7 (266-324)||(13418948-13419007)
chr7 (129-317)||(28462492-28462682)
chr7 (266-323)||(24197105-24197163)
chr7 (266-317)||(12385709-12385761)
chr7 (266-302)||(17066446-17066482)
chr7 (269-323)||(5611512-5611567)
chr7 (266-324)||(35212066-35212125)
chr7 (268-317)||(32196689-32196739)
chr7 (266-326)||(42254954-42255015)
chr7 (270-302)||(554266-554298)
chr7 (292-331)||(1614873-1614913)
chr7 (266-317)||(11217073-11217125)
chr7 (270-302)||(38742202-38742234)
chr7 (266-302)||(41694957-41694993)
[»] scaffold0002 (4 HSPs)
scaffold0002 (129-323)||(345762-345957)
scaffold0002 (266-323)||(344936-344994)
scaffold0002 (269-322)||(374335-374389)
scaffold0002 (276-323)||(376381-376429)
[»] chr8 (27 HSPs)
chr8 (125-323)||(1385415-1385615)
chr8 (125-323)||(1376934-1377134)
chr8 (266-333)||(10718450-10718518)
chr8 (131-206)||(296986-297061)
chr8 (266-324)||(22272272-22272331)
chr8 (266-323)||(10717120-10717178)
chr8 (266-323)||(38658480-38658538)
chr8 (266-317)||(4182627-4182679)
chr8 (266-325)||(22534724-22534784)
chr8 (266-325)||(36588219-36588279)
chr8 (269-322)||(28997998-28998052)
chr8 (266-323)||(38456732-38456790)
chr8 (266-323)||(45517962-45518020)
chr8 (266-325)||(22533314-22533374)
chr8 (266-317)||(28996839-28996891)
chr8 (129-221)||(30123254-30123346)
chr8 (268-323)||(41847184-41847240)
chr8 (266-328)||(34904511-34904574)
chr8 (268-317)||(3483638-3483688)
chr8 (266-323)||(22270942-22271000)
chr8 (135-221)||(28875315-28875401)
chr8 (276-325)||(30123149-30123199)
chr8 (269-317)||(38455452-38455501)
chr8 (269-324)||(14197823-14197879)
chr8 (269-328)||(27117922-27117982)
chr8 (266-325)||(36589389-36589449)
chr8 (266-317)||(45516402-45516454)
[»] chr6 (18 HSPs)
chr6 (129-221)||(33131856-33131948)
chr6 (266-322)||(20897499-20897556)
chr6 (129-221)||(25439750-25439842)
chr6 (266-323)||(21953205-21953263)
chr6 (266-325)||(16995448-16995508)
chr6 (269-327)||(20391209-20391268)
chr6 (266-323)||(34998143-34998201)
chr6 (266-322)||(18810532-18810589)
chr6 (266-322)||(21165246-21165303)
chr6 (266-326)||(26421845-26421906)
chr6 (268-323)||(29291358-29291414)
chr6 (268-322)||(1974156-1974211)
chr6 (269-323)||(3276366-3276421)
chr6 (266-323)||(17517311-17517369)
chr6 (266-323)||(34995113-34995171)
chr6 (266-322)||(1972400-1972457)
chr6 (266-322)||(20393270-20393327)
chr6 (276-327)||(20895953-20896005)
[»] chr5 (12 HSPs)
chr5 (266-332)||(3936568-3936635)
chr5 (266-323)||(3954051-3954109)
chr5 (130-204)||(27098232-27098306)
chr5 (266-325)||(27571131-27571191)
chr5 (266-323)||(31540495-31540553)
chr5 (269-309)||(15604063-15604103)
chr5 (266-323)||(4565392-4565450)
chr5 (270-323)||(15599764-15599818)
chr5 (269-325)||(34911833-34911890)
chr5 (266-329)||(3938062-3938126)
chr5 (292-335)||(5917429-5917473)
chr5 (270-317)||(27570061-27570109)
[»] scaffold0517 (2 HSPs)
scaffold0517 (266-324)||(11524-11583)
scaffold0517 (266-322)||(10315-10372)
[»] scaffold0106 (1 HSPs)
scaffold0106 (266-323)||(30909-30967)
[»] scaffold0001 (2 HSPs)
scaffold0001 (266-322)||(119593-119650)
scaffold0001 (266-322)||(120987-121044)
[»] scaffold0230 (1 HSPs)
scaffold0230 (266-322)||(433-490)
[»] scaffold0599 (1 HSPs)
scaffold0599 (266-302)||(6586-6622)
[»] scaffold0562 (1 HSPs)
scaffold0562 (266-323)||(9921-9979)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 125 - 324
Target Start/End: Original strand, 17977419 - 17977620
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       
T  17977419 gacatggctgccacatgtgcaaaatgaaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggccaaggacctttttaaa 17977518  T
Q  225 nnnnnnnnnnttttgcagggattgatttc-aagannnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
              ||||||||||||||||||| ||          |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17977519 aaacaaaaaattttgcagggattgatttcaaattttttttttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaaccatatttaagcc 17977618  T
Q  323 tt 324  Q
    ||    
T  17977619 tt 17977620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 125 - 322
Target Start/End: Complemental strand, 17976962 - 17976761
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||       
T  17976962 gacatggctgccacttgtgcaaaatgaaacagtcagcaggtgacacatatgcaaaaatcagacacatagataagaaagtggggccaaggacctttttaaa 17976863  T
Q  225 nnnnnnnnnnttttgcagggattgatttcaa---gannnnnnnnaccagggaccaaaacccaaattcgctatatttgcagg-accaaaaccatatttaag 320  Q
              |||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17976862 aaacaaaaaattttgcagggattgatttcaaattttttttttttaccagggaccaaaacccaaattcgctatatttgcaggaaccaaaaccatatttaag 17976763  T
Q  321 cc 322  Q
    ||    
T  17976762 cc 17976761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 125 - 321
Target Start/End: Original strand, 27816580 - 27816778
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    |||||||||||||||| |||||| | |||||||||||| ||||||| || ||||||||| ||||||||| |||||||||||||  ||||||||||||       
T  27816580 gacatggctgccacatatgcaaatttgaacagtcagcacgtgacacgtaagcaaaaatctgacacataggcaagaaagtggggcgaaggacctttttaaa 27816679  T
Q  225 nnnnnnnnnnttttgcagggattgatttcaaga-nnnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagc 321  Q
              ||||||||||||||||||||| |         |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  27816680 aaacaaaaaattttgcagggattgatttcaaaatttttttttaccagggaccaaaacccaaattggctatatttgcagggaccaaaaccatatttaagc 27816778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 324
Target Start/End: Complemental strand, 27815640 - 27815439
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    |||||||||||||||| |||||| | |||||||||||| ||||||| || ||||||||| ||||||||| |||||||||||||  ||||||||||||       
T  27815640 gacatggctgccacatatgcaaatttgaacagtcagcacgtgacacgtaagcaaaaatctgacacataggcaagaaagtggggcgaaggacctttttaaa 27815541  T
Q  225 nnnnnnnnnnttttgcagggattgatttcaaga-nnnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
              ||||||||||||||||||||| |         |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||    
T  27815540 aaacaaaaaattttgcagggattgatttcaaaatttttttttaccagggaccaaaacccaaattggctatatttgcagggaccagaaccatatttaagcc 27815441  T
Q  323 tt 324  Q
    ||    
T  27815440 tt 27815439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 13074315 - 13074224
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||| |||  ||||||||||| ||||||| ||||||||||| ||||||||| | |||||||||||   ||||||||||||    
T  13074315 tggctgccacatgtgcacaattaaacagtcagcaagtgacacctatgcaaaaataagacacata-aaaagaaagtgggcctaaggaccttttt 13074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 9774890 - 9774950
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  9774890 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagccttt 9774950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 48857052 - 48857140
Alignment:
Q  133 tgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||| |||  ||||||||||| ||||||| ||||||||||| ||| |||||  ||||||||||||   ||||||||||||    
T  48857052 tgccacatgtgcacaattaaacagtcagcaagtgacacctatgcaaaaataagatacataagcaagaaagtgggcctaaggaccttttt 48857140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 37395690 - 37395631
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||    
T  37395690 accagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagcctt 37395631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 20723690 - 20723752
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttat 327  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  20723690 accagggactaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcctttat 20723752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 27264218 - 27264276
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  27264218 accagggaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcct 27264276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 35721158 - 35721100
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  35721158 accagggaccaaaacccaaattcgttatatttgcagggaccaaaaacatattttagcct 35721100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 20722529 - 20722472
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||||    
T  20722529 accagggaccaaaacccaaattcgctatatttgcagggaccaaaagcacattttagcc 20722472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 35910709 - 35910652
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcaggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||| ||||  ||||||||||||||||||||| ||||||| |||||    
T  35910709 accagggaccaaaaccgaaatatgctatatttgcaggaccaaaatcatattttagcct 35910652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 27262965 - 27262897
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttattatata 333  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||| ||||||| ||||||  |||||||    
T  27262965 accagggaccaaaacacaaactcgctatatttgcagggaccaaaaacatattttagccttatttatata 27262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 26863917 - 26863858
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| || |||| ||||||    
T  26863917 accagggaccaaaactcaaattcgctatatttgcagggaccaaaaacacattttagcctt 26863858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 35911890 - 35911949
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||    
T  35911890 accaaggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagcctt 35911949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 34934749 - 34934807
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||| |||||||||||||||||||||||||||||| |||| |||| ||||||| |||||    
T  34934749 accaaggaccaaaacccaaattcgctatatttgcagggacaaaaagcatattttagcct 34934807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 11711256 - 11711312
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||    
T  11711256 accagggaccaaa-cccaaattcgctatatttgcagggaccaaaaacatattttagcc 11711312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 37396842 - 37396899
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||| |||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  37396842 accaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 37396899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 46075052 - 46075109
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||||    
T  46075052 accagggaccaaaacccaaactcgctatatttgcagggatcaaaaacatattttagcc 46075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 47038923 - 47038862
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttta 326  Q
    |||||||||||||||||||| | |||||||||||| |||| |||| ||||||| ||||||||    
T  47038923 accagggaccaaaacccaaactagctatatttgcagggactaaaaacatattttagccttta 47038862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 24609973 - 24609919
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||||| |||| ||||||||| ||||||||| ||||||| ||||    
T  24609973 agggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagcc 24609919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 35722287 - 35722345
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||| |||||||| ||||||||||||||||| || ||||||||| ||||||| |||||    
T  35722287 accagagaccaaaatccaaattcgctatatttacagggaccaaaaacatattttagcct 35722345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 39163026 - 39163084
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||  |||| ||||||||| ||||||||| ||||||| |||||    
T  39163026 accagggaccaaaacccaacctcgccatatttgcagggaccaaaagcatattttagcct 39163084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 45979506 - 45979556
Alignment:
Q  274 ccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||| |||||    
T  45979506 ccaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcct 45979556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 46073942 - 46073884
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||| |||||||||||| |||||||||||| ||| ||||| ||||||| |||||    
T  46073942 accagggactaaaacccaaatttgctatatttgcagggatcaaaagcatattttagcct 46073884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 51240174 - 51240124
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatattt 317  Q
    |||||| ||||| ||||||||||||||||||||| |||||||| |||||||    
T  51240174 cagggatcaaaatccaaattcgctatatttgcagagaccaaaaacatattt 51240124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 23469971 - 23470028
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||||| ||||||| ||| |||||||||||||| ||||||||| ||||||| ||||    
T  23469971 accagggatcaaaaccgaaactcgctatatttgcagggaccaaaaacatattttagcc 23470028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 26865186 - 26865243
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatatttaagcc 322  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||  |||||| ||||    
T  26865186 accagggactaaaatccaaattcgctatatttgcagagaccaaaaatatattttagcc 26865243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 9774094 - 9774042
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    ||||||||||||||| |||| ||| |||||||||| ||||||||| |||||||    
T  9774094 accagggaccaaaactcaaactcgttatatttgcagggaccaaaaacatattt 9774042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 11710610 - 11710546
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttatta 329  Q
    |||||||||||||||||||  ||| ||||||| || ||| ||||| ||||||| |||||||||||    
T  11710610 accagggaccaaaacccaacctcgttatatttacagggatcaaaaacatattttagcctttatta 11710546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 48334136 - 48334192
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||| |||||||| ||||||||||||||||| | ||||||||| ||||||| |||||    
T  48334136 caggaaccaaaactcaaattcgctatatttgtagggaccaaaagcatattttagcct 48334192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 125 - 334
Target Start/End: Original strand, 17326594 - 17326805
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       
T  17326594 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggccaaggacctttttaaa 17326693  T
Q  225 nnnnnnnnnnttttgcagggattgatttc-aagannnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
               |||||||||||||||||| || |        || |||||||||||||||||| | ||||||||| | ||||||||||||||||||||||    
T  17326694 aaacaaaaaaatttgcagggattgatttcaaaaaaaatttttactagggaccaaaacccaaatgccctatatttggagggaccaaaaccatatttaagcc 17326793  T
Q  323 tttattatataa 334  Q
    || ||| |||||    
T  17326794 ttaattgtataa 17326805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 17321141 - 17321045
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  17321141 gacatggctgccacatgtgcaaaatggaacagttagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggccaaggatcttttt 17321045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 16574232 - 16574324
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||| |||  |||| |||||| ||||||| ||||||||||  |||||||||  ||||||||||||   ||||||||||||    
T  16574232 tggctgccacatgtgcacaattaaacaatcagcaagtgacacctatgcaaaaagaagacacataagcaagaaagtgggcctaaggaccttttt 16574324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 3880501 - 3880557
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgcagg-accaaaaccatatttaagcctt 324  Q
    ||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||    
T  3880501 agggaccaaaacccaaactcgctatatttgcaggaaccaaaaacatattttagcctt 3880557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 34660643 - 34660719
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtgg 205  Q
    ||||||||||||| ||| |||  ||||||||||| ||||||||||||||||||| | |||||||  ||| |||||||    
T  34660643 tggctgccacatgagcataattaaacagtcagcaagtgacacatatgcaaaaataatacacataagcaaaaaagtgg 34660719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 44705499 - 44705407
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||| |||  ||||||||||| |||| || |||| |||||| |||||||||  |||||||| |||   ||||||||||||    
T  44705499 tggctgccacatgtgcataattaaacagtcagcaagtgatacctatgtaaaaataagacacataagcaagaaagcgggtctaaggaccttttt 44705407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 19674471 - 19674413
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatatttaagcct 323  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||| ||||||| |||||    
T  19674471 accagggaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagcct 19674413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 45618342 - 45618292
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatat 315  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  45618342 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatat 45618292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 16573435 - 16573374
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatatttaagccttta 326  Q
    ||||| ||||||||||||||||||| ||||||| || |||||||| ||||||| ||||||||    
T  16573435 accagagaccaaaacccaaattcgccatatttgtagagaccaaaagcatattttagccttta 16573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 22204112 - 22204055
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||| ||||||| ||||    
T  22204112 accagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 22204055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 41933870 - 41933817
Alignment:
Q  271 ggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatatttaagcct 323  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  41933870 ggaccaaaacccaaactcgctatatttgcagagaccaaaatcatattttagcct 41933817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 42359348 - 42359405
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| ||||    
T  42359348 accagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcc 42359405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 17281628 - 17281592
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||| ||||||||||||||||||||||    
T  17281628 accagggaccaaaatccaaattcgctatatttgcagg 17281592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 17370130 - 17370094
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||| ||||||||||||||||||||||    
T  17370130 accagggaccaaaatccaaattcgctatatttgcagg 17370094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 17371847 - 17371883
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17371847 accagggaccaaaacccaaattcgttatatttgcagg 17371883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 40198631 - 40198595
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||||||||| ||||||||||||||||    
T  40198631 accagggaccaaaacccaaactcgctatatttgcagg 40198595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 33137230 - 33137289
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    ||||||||| |||||||||| |||||||||||||| ||| ||||| ||||||| ||||||    
T  33137230 accagggactaaaacccaaactcgctatatttgcagggatcaaaaacatattttagcctt 33137289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 3879143 - 3879085
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||| ||||| |||||||||||||| ||| ||||| ||||||| |||||    
T  3879143 accagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcct 3879085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 32699319 - 32699373
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||||| ||||||||||| || ||||||||| ||||||| ||||    
T  32699319 agggaccaaaacccaaactcgctatatttacagggaccaaaaacatattttagcc 32699373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 35054713 - 35054683
Alignment:
Q  272 gaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||||||||||||||||||||    
T  35054713 gaccaaaacccaaattcgctatatttgcagg 35054683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 44705349 - 44705299
Alignment:
Q  273 accaaaacccaaattcgctatatttgcag-gaccaaaaccatatttaagcc 322  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||| ||||    
T  44705349 accaaaacccaaattcactatatttgcagagaccaaaaacatattttagcc 44705299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 30046761 - 30046802
Alignment:
Q  292 atatttgcagg-accaaaaccatatttaagcctttattatat 332  Q
    ||||||||||| ||||||||||||||| ||||||||||||||    
T  30046761 atatttgcagggaccaaaaccatattttagcctttattatat 30046802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 30061102 - 30061143
Alignment:
Q  292 atatttgcagg-accaaaaccatatttaagcctttattatat 332  Q
    ||||||||||| ||||||||||||||| ||||||||||||||    
T  30061102 atatttgcagggaccaaaaccatattttagcctttattatat 30061143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 20245166 - 20245261
Alignment:
Q  126 acatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20245166 acatggctgccacatgagcaaaattgaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggccaaggaccttttt 20245261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 25283136 - 25283228
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||| |||  ||||||||||| ||||||| ||||||||||| |||||||||  ||||||||||||   ||||||||||||    
T  25283136 tggctgccacatgtgcacaattaaacagtcagcaagtgacacctatgcaaaaataagacacataagcaagaaagtgggcctaaggaccttttt 25283228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 29794178 - 29794270
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||| |||  ||||||||||| ||||||  ||||||||||| |||||||||  ||||||||||||   ||||||||||||    
T  29794178 tggctgccacatgtgcacaattaaacagtcagcaagtgacagctatgcaaaaataagacacataagcaagaaagtgggtctaaggaccttttt 29794270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 25979253 - 25979312
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  25979253 accagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagcctt 25979312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 1777526 - 1777463
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttatt 328  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||| ||||||| ||||||||||    
T  1777526 accagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagcctttatt 1777463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 8809654 - 8809593
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca--ggaccaaaaccatatttaagccttt 325  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||| ||||||| |||||||    
T  8809654 accagggaccaaaacccaaattcgttatatttgcaagggaccaaaaacatattttagccttt 8809593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 20245307 - 20245366
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagga--ccaaaaccatatttaagcct 323  Q
    ||||||||| ||||||||||||||||||||||||||||  | |||||||||||| |||||    
T  20245307 accagggactaaaacccaaattcgctatatttgcaggaatcaaaaaccatattttagcct 20245366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 2412430 - 2412488
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  2412430 accagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcct 2412488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 25977927 - 25977869
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| || ||||||||||| ||||||||| ||||||| |||||    
T  25977927 accagggaccaaaacccaaactcactatatttgcagggaccaaaaacatattttagcct 25977869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 1778792 - 1778849
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg-accaaaaccatatttaagcc 322  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||    
T  1778792 accaaggaccaaaacccaaagtcgctatatttgcaggaaccaaaagcatattttagcc 1778849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 25283274 - 25283331
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatatttaagcc 322  Q
    |||||||| |||||| |||||||||||||||||||| |||||||| ||||||| ||||    
T  25283274 accagggatcaaaactcaaattcgctatatttgcagtgaccaaaaacatattttagcc 25283331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 36837780 - 36837824
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcag-gaccaaaa 309  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  36837780 accagggaccaaaacccaaactcgctatatttgcagagaccaaaa 36837824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 11088682 - 11088739
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||| |||||||| ||||||||||||||||||| |||| |||| ||||||| ||||    
T  11088682 accaggaaccaaaactcaaattcgctatatttgcatggacgaaaaacatattttagcc 11088739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 19603790 - 19603737
Alignment:
Q  271 ggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||||||||||  | |||||||||| ||||||||| |||||||||||||    
T  19603790 ggaccaaaacccaaatgagttatatttgcagggaccaaaaacatatttaagcct 19603737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 4040218 - 4040270
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||||||| ||||||| |||||| ||||||||||| ||||||||| |||||||    
T  4040218 accagggagcaaaacctaaattctctatatttgcagggaccaaaatcatattt 4040270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 8810705 - 8810757
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatattt 317  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||| |||||||    
T  8810705 accagggattaaaatccaaattcgctatatttgcagagaccaaaaacatattt 8810757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 29794321 - 29794376
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||| |||||||| ||||||||||||||||||| ||||||||| ||||||| |||||    
T  29794321 caggaaccaaaactcaaattcgctatatttgcagggaccaaaa-catattttagcct 29794376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 125 - 323
Target Start/End: Original strand, 47433673 - 47433869
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||| ||||||||||||||       
T  47433673 gacatggctgccacatgagcaaaattgaacagtcaacaggtgacacgtatgcaaaaatcagacac--agacaagaaagtgggatcaaggacctttttaaa 47433770  T
Q  225 nnnnnnnnnnttttgcagggattgatttcaagannnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
              |||||||||||||||||||||          ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  47433771 aaacaaaaaattttgcagggattgatttcaa-tttttttttaccagggaccaaaactcaaattcgctatatttgcagggaccaaaaccatattttagcct 47433869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 39820606 - 39820664
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  39820606 accagggaccaaaacccaaactcgctatatttgcagggaccaaaaccatattttagcct 39820664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 976975 - 976899
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtgg 205  Q
    |||||||| |||||||| |||  ||||||||||| ||||||| ||||||||||| |||||||||  |||||||||||    
T  976975 tggctgccgcatgtgcacaattaaacagtcagcaagtgacacctatgcaaaaataagacacataagcaagaaagtgg 976899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 20488559 - 20488483
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtgg 205  Q
    ||||||||||||||||| |||  |||| |||||| ||||||| |||||||||||||||||||||  ||| |||||||    
T  20488559 tggctgccacatgtgcacaattaaacaatcagcatgtgacacctatgcaaaaatcagacacataagcaataaagtgg 20488483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 52401074 - 52401015
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||| ||||||| ||||||    
T  52401074 accagggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagcctt 52401015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 53121359 - 53121300
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  53121359 accagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctt 53121300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 54437472 - 54437527
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||    
T  54437472 agggaccaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcct 54437527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 40477379 - 40477437
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttta 326  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| ||||||| ||||||||    
T  40477379 agggaccaaaacccaaactcgttatatttgcagggaccaaaatcatattttagccttta 40477437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 52403126 - 52403184
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||    
T  52403126 accagggaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcct 52403184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 52707591 - 52707541
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatattt 317  Q
    ||||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  52707591 cagggaccaaaactcaaattcgctatatttgcaaggaccaaaaacatattt 52707541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 52708619 - 52708676
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||| ||||||| ||||    
T  52708619 accagagaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcc 52708676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 11914835 - 11914871
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11914835 accaggcaccaaaacccaaattcgctatatttgcagg 11914871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 20488423 - 20488371
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||| |||||||    
T  20488423 accagggaccaaaacccaaattcaccatatttgcagggaccaaaaacatattt 20488371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 46026130 - 46026075
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||||| ||||| |||||||||||||| ||||||||| ||||||| |||||    
T  46026130 agggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcct 46026075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 4707336 - 4707393
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcaga 186  Q
    ||||||||||||||||| |||  |||||| |||| ||||||  |||||||||||||||    
T  4707336 tggctgccacatgtgcacaattaaacagttagcaagtgacatctatgcaaaaatcaga 4707393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 39819369 - 39819308
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttta 326  Q
    ||||||||||||||  |||| |||||||||||||| |||| |||||||||||| || |||||    
T  39819369 accagggaccaaaattcaaactcgctatatttgcagggactaaaaccatattttaggcttta 39819308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 46104400 - 46104343
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||| ||||| |||| |||||||||||||| ||||||||| ||||||| ||||    
T  46104400 accagggacaaaaactcaaactcgctatatttgcagggaccaaaatcatattttagcc 46104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 20489360 - 20489412
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||||||||||||||||||| |||  ||||||||| ||||||||| |||||||    
T  20489360 accagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattt 20489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 20585648 - 20585704
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||| ||||| |||||||||||||| ||| ||||| ||||||| |||||    
T  20585648 cagggaccaaaatccaaactcgctatatttgcagggatcaaaaacatattttagcct 20585704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 22508792 - 22508740
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||| |||||||||| |||| |||||||||||||| ||||||||| |||||||    
T  22508792 accaaggaccaaaactcaaactcgctatatttgcagggaccaaaatcatattt 22508740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 42446577 - 42446525
Alignment:
Q  272 gaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||    
T  42446577 gaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcct 42446525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 45267362 - 45267326
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  45267362 accagggaccaaaactcaaactcgctatatttgcagg 45267326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 45268572 - 45268608
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||||||||| | ||||||||||||||    
T  45268572 accagggaccaaaacccaaacttgctatatttgcagg 45268608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 323 - 436
Target Start/End: Original strand, 19761772 - 19761883
Alignment:
Q  323 tttattatataatgacagaaagaaggatcatttccatcatctttctttccctcccaaaatataaaacgaacatac---ccaccaccacctattcaaaaca 419  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    ||||||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  19761772 tttattatatagtgacagaa-gaaggatcatttccatcatctt----tccctcccaaaatataaaacgaatatacccaccaccaccacctattcaaaaca 19761866  T
Q  420 aacaacagaaagagaaa 436  Q
    |||||||||||||||||    
T  19761867 aacaacagaaagagaaa 19761883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 125 - 316
Target Start/End: Original strand, 43869772 - 43869965
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    |||||||||||||||| |||||| | |||||||||||| ||||||| || |||||| || ||||||||| |||||||||||||  ||||||||||||       
T  43869772 gacatggctgccacatatgcaaatttgaacagtcagcacgtgacacgtaagcaaaattctgacacataggcaagaaagtggggcgaaggacctttttaaa 43869871  T
Q  225 nnnnnnnnnnttttgcagggattgatttc-aagannnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatt 316  Q
              ||||||||||||||||||| || |        |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  43869872 aaacaaaaaattttgcagggattgatttcaaaaaaaaattttaccagggaccaaaacccaaattggctatatttgcagggaccaaaaccatatt 43869965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 31848146 - 31848204
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||    
T  31848146 accagggaccaaaacccaaattcgctatatttgcagggactaaaaacatattttagcct 31848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 32197911 - 32197969
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  32197911 accaaggaccaaaacccaaattcgctatatttgcagggaccaaaagcatattttagcct 32197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 24195664 - 24195603
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttta 326  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||    
T  24195664 accagggagcaaaacccaaactcgctatatttgcagggaccaaaaacatattttagccttta 24195603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 41693702 - 41693641
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttta 326  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||| ||||||||    
T  41693702 accagggaccaaaacccaaattcgccatatttgcagggatcaaaaacatattttagccttta 41693641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 32544776 - 32544828
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  32544776 accaaggaccaaaacccaaattcgctatatttgcagggaccaaaatcatattt 32544828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 13419007 - 13418948
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||| ||||||| ||||||    
T  13419007 accagggaccaatacccaaattcgcaatatttgcagggaccaaaaacatattttagcctt 13418948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 317
Target Start/End: Original strand, 28462492 - 28462682
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaa-gtggggtcaaggacctttttnnnnnn 227  Q
    ||||||||||||||||| | |  ||||||||||| ||||||| ||||||||||| |||||||||  ||| ||| |||||   ||||||||||||          
T  28462492 tggctgccacatgtgcacagttaaacagtcagcaagtgacacctatgcaaaaataagacacataagcaaaaaatgtgggcctaaggacctttttaaaaaa 28462591  T
Q  228 nnnnnnnttttgcagggattgatttcaagannnnnnnnaccagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatattt 317  Q
           |||||||||||||||||||||          |||||||| |||||||||||||||  |||||||||| |||||||| |||||||    
T  28462592 caaaaaattttgcagggattgatttcaattttttttttaccagggatcaaaacccaaattcgtcatatttgcagagaccaaaagcatattt 28462682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 24197105 - 24197163
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||| ||||||| |||||    
T  24197105 accaggaaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcct 24197163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 12385709 - 12385761
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||| |||||||    
T  12385709 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 12385761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 17066482 - 17066446
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17066482 accagggaccaaaacccaaactcgctatatttgcagg 17066446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 5611512 - 5611567
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||| |||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  5611512 agggacgaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcct 5611567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 35212125 - 35212066
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    |||||||||||||||||||| |||  ||||||||| ||||||||| ||||||| ||||||    
T  35212125 accagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagcctt 35212066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 32196739 - 32196689
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||||||||||| |||||| ||||||||||||| ||||||||| |||||||    
T  32196739 cagggaccaaaatccaaatacgctatatttgcagggaccaaaaacatattt 32196689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 42255015 - 42254954
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttta 326  Q
    ||||||||||||||| |||| |||| |||||| || ||||||||| ||||||| ||||||||    
T  42255015 accagggaccaaaactcaaactcgccatatttacagggaccaaaagcatattttagccttta 42254954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 554298 - 554266
Alignment:
Q  270 gggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||||| ||||||||||||||||    
T  554298 gggaccaaaacccaaactcgctatatttgcagg 554266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 1614873 - 1614913
Alignment:
Q  292 atatttgcagg-accaaaaccatatttaagcctttattata 331  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  1614873 atatttgcagggaccaaaaccatattttagcctttattata 1614913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 11217073 - 11217125
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    ||||||||||||||  |||| |||||||||||||| ||||||||| |||||||    
T  11217073 accagggaccaaaattcaaactcgctatatttgcagggaccaaaagcatattt 11217125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 38742234 - 38742202
Alignment:
Q  270 gggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||||||||||||| ||||||||||||||||    
T  38742234 gggaccaaaacccaaactcgctatatttgcagg 38742202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 41694957 - 41694993
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  41694957 accagggaccaaaactcaaactcgctatatttgcagg 41694993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 323
Target Start/End: Original strand, 345762 - 345957
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnnnnnn 228  Q
    ||||||||||||||||| |||  ||||||||||| |||||| || ||||||||| ||| |||||  |||||||||| |   ||||||||||||           
T  345762 tggctgccacatgtgcacaattaaacagtcagcaagtgacatatgtgcaaaaataagatacataagcaagaaagtgtgtctaaggacctttttaaaaaac 345861  T
Q  229 nnnnnnttttgcagggattgatttcaagannnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
          ||||||||||||||||||||| |        || |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  345862 aaaaaattttgcagggattgatttcaaaaaaaaaattactagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagcct 345957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 344994 - 344936
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||    
T  344994 accagggaccaaaacccaaactcgccatatttgcagggaccaaaatcatatttgagcct 344936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 374389 - 374335
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||||    
T  374389 agggaccaaaacccaaactcgctatatttgcagggatcaaaatcatattttagcc 374335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 376381 - 376429
Alignment:
Q  276 aaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  376381 aaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 376429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 323
Target Start/End: Original strand, 1385415 - 1385615
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    |||||||||||||| | |||||| | |||||||||||||||||||  || | ||||||  ||||||||| |||||||||||||  || |||||||||       
T  1385415 gacatggctgccacctatgcaaatttgaacagtcagcaggtgacaagtaagaaaaaatatgacacataggcaagaaagtggggcgaaagacctttttaaa 1385514  T
Q  225 nnnnnnnnnnttttgcagggattgatttcaagannnnnnnn-accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
              |||||||||||||||||||||           |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  1385515 aaacaaaaaattttgcagggattgatttcaaattttttttttaccagggaccaaaatccaaattggctatatttgcagggaccaaaaccatatttaagcc 1385614  T
Q  323 t 323  Q
    |    
T  1385615 t 1385615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 323
Target Start/End: Complemental strand, 1377134 - 1376934
Alignment:
Q  125 gacatggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggacctttttnnn 224  Q
    |||||||||||||| | |||||| | |||||||||||||||||||  || | ||||||  ||||||||| |||||||||||||  || |||||||||       
T  1377134 gacatggctgccacctatgcaaatttgaacagtcagcaggtgacatgtaagtaaaaatttgacacataggcaagaaagtggggcgaatgacctttttaaa 1377035  T
Q  225 nnnnnnnnnnttttgcagggattgatttc-aagannnnnnnnaccagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
              ||||||||||||||||||| ||          |||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||    
T  1377034 aaacaaaaaattttgcagggattgatttcaaattttttttttaccagggaccaaaatccaaattggctatatttgcagggaccaaaatcatatttaagcc 1376935  T
Q  323 t 323  Q
    |    
T  1376934 t 1376934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 10718450 - 10718518
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttattatata 333  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||| |||| ||||    
T  10718450 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctatattttata 10718518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 296986 - 297061
Alignment:
Q  131 gctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggg 206  Q
    |||||| |||||||| |||  ||||||||||| ||||||| ||||||||||| |||||||||  ||||||||||||    
T  296986 gctgccgcatgtgcacaattaaacagtcagcaagtgacacctatgcaaaaataagacacataagcaagaaagtggg 297061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 22272272 - 22272331
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatatttaagcctt 324  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||||||| ||||||    
T  22272272 accagggaccaaaacccaaattcgctatatttgcggggaccaaaagcatattttagcctt 22272331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 10717178 - 10717120
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  10717178 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 10717120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 38658538 - 38658480
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||||||||||||||||||||||||||||| |||||| || ||||||| |||||    
T  38658538 accagggaccaaaacccaaattcgctatatttgcatggaccagaagcatattttagcct 38658480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 4182679 - 4182627
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  4182679 accagggaccaaaacccaaattcgctatatttacagggaccaaaagcatattt 4182627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 22534724 - 22534784
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| |||||||    
T  22534724 accagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttagccttt 22534784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 36588279 - 36588219
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||| ||||||| |||||||    
T  36588279 accagggaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagccttt 36588219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 28997998 - 28998052
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||    
T  28997998 agggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 28998052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 38456732 - 38456790
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||| ||||||| |||||    
T  38456732 accagggaccaaaacctaaatttgctatatttgcagggaccaaaagcatattttagcct 38456790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 45517962 - 45518020
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||| ||||||| |||||    
T  45517962 accagggaccaaaacccaaactcgctatacttgcagggaccaaaagcatattttagcct 45518020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 22533374 - 22533314
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    |||||||||||||||||||| ||||||||| | || ||||||||| ||||||| |||||||    
T  22533374 accagggaccaaaacccaaactcgctatatatacagggaccaaaagcatattttagccttt 22533314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 28996891 - 28996839
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    |||||||||||||||||||| || ||||||||||| ||||||||| |||||||    
T  28996891 accagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattt 28996839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 30123346 - 30123254
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    |||| |||||||||||| |||  |||| |||||| ||||||| ||||  |||||||||||||||  ||||| ||||||   ||||||||||||    
T  30123346 tggccgccacatgtgcacaattaaacaatcagcaagtgacacttatgggaaaatcagacacataagcaagagagtgggcctaaggaccttttt 30123254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 41847184 - 41847240
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatatttaagcct 323  Q
    ||||||||||||| |||||||||||||||||||| ||| |||| ||||||| |||||    
T  41847184 cagggaccaaaactcaaattcgctatatttgcagagactaaaagcatattttagcct 41847240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 34904511 - 34904574
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttatt 328  Q
    |||||| |||||||||||||||||||||||||| | |||| |||| ||||||| | ||||||||    
T  34904511 accaggaaccaaaacccaaattcgctatatttgaagggactaaaatcatatttcaacctttatt 34904574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 3483688 - 3483638
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    ||||||||||||| |||| |||||||||||||| ||||||||| |||||||    
T  3483688 cagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattt 3483638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 22271000 - 22270942
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||| |||| |||||||||||||||||||| ||| ||||| ||||||| |||||    
T  22271000 accagggactaaaatccaaattcgctatatttgcagggatcaaaagcatattttagcct 22270942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 28875315 - 28875401
Alignment:
Q  135 ccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||| |||  || |||| ||| ||||||| ||| ||||||||| |||||||  ||||||||||||  |||| ||||||||    
T  28875315 ccacatgtgcacaattaaatagtctgcaagtgacacctatacaaaaatcaaacacataagcaagaaagtgggcccaagaaccttttt 28875401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 30123199 - 30123149
Alignment:
Q  276 aaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    ||||||||||||||||||||||| | ||||||||| ||||||| |||||||    
T  30123199 aaaacccaaattcgctatatttgtatggaccaaaaacatattttagccttt 30123149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 38455501 - 38455452
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatattt 317  Q
    |||||||||||| ||||||| |||||||||| |||||||||| |||||||    
T  38455501 agggaccaaaactcaaattcactatatttgcaaggaccaaaaacatattt 38455452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 14197879 - 14197823
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    ||||||||||| ||||| |||| ||||||||| ||||||||| ||||||| ||||||    
T  14197879 agggaccaaaatccaaactcgccatatttgcagggaccaaaaacatattttagcctt 14197823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 27117922 - 27117982
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgcagg-accaaaaccatatttaagcctttatt 328  Q
    ||||||||||||| ||||  |  ||||||||||| ||||||||||||||| ||||||||||    
T  27117922 agggaccaaaaccaaaatgaggcatatttgcagggaccaaaaccatattttagcctttatt 27117982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 36589389 - 36589449
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg-accaaaaccatatttaagccttt 325  Q
    |||| ||||||||||| ||| |||||||||||||||| || |||| ||||||| |||||||    
T  36589389 accaaggaccaaaacctaaactcgctatatttgcaggaactaaaatcatattttagccttt 36589449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 45516454 - 45516402
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatattt 317  Q
    ||||| |||||||||||||||||||||||||| || |||| |||| |||||||    
T  45516454 accagagaccaaaacccaaattcgctatatttacatggactaaaaacatattt 45516402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 33131948 - 33131856
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||| |||  ||||||||||| ||||||| ||| ||||||| |||||||||  ||||||||||||   ||||||||||||    
T  33131948 tggctgccacatgtgcacaattaaacagtcagcaagtgacacttatacaaaaataagacacataagcaagaaagtgggcctaaggaccttttt 33131856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 20897499 - 20897556
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  20897499 accagggaccaaaacccaaattcactatatttgcagggaccaaaaccatattttagcc 20897556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 25439842 - 25439750
Alignment:
Q  129 tggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtggggtcaaggaccttttt 221  Q
    ||||||||||||||||| |||  ||||||||||| ||||||| ||||||||||| ||||| |||  |||||||| |||   ||||||||||||    
T  25439842 tggctgccacatgtgcacaattaaacagtcagcaagtgacacctatgcaaaaataagacatataagcaagaaagcgggtctaaggaccttttt 25439750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 21953263 - 21953205
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||    
T  21953263 accagggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagcct 21953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 16995508 - 16995448
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||| |||||||    
T  16995508 accagggaccaaaacccaaattctttatatttgcagggaccaaaaacatattttagccttt 16995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 20391268 - 20391209
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttat 327  Q
    |||||||||||||||||||| ||||||||||| ||||||||| ||||||| | |||||||    
T  20391268 agggaccaaaacccaaattcactatatttgcagggaccaaaagcatattttaacctttat 20391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 34998143 - 34998201
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| |||||    
T  34998143 accagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttagcct 34998201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 18810589 - 18810532
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||    
T  18810589 accagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 18810532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 21165303 - 21165246
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||| ||||||| ||||    
T  21165303 accagggaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagcc 21165246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 26421845 - 26421906
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcag-gaccaaaaccatatttaagccttta 326  Q
    ||||||||| ||||| |||||||||||||||||||| |||||||| ||| ||| ||||||||    
T  26421845 accagggactaaaactcaaattcgctatatttgcagagaccaaaaacatgttttagccttta 26421906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 29291414 - 29291358
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||| |||| |||||||| |||||||||| ||||||| |||||    
T  29291414 cagggaccaaaacccaaactcgccatatttgcaaggaccaaaagcatattttagcct 29291358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 1974156 - 1974211
Alignment:
Q  268 cagggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatatttaagcc 322  Q
    ||||||||||||| |||||||||||||||||| |||| ||||| ||||||| ||||    
T  1974156 cagggaccaaaactcaaattcgctatatttgcaaggatcaaaaacatattttagcc 1974211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 3276421 - 3276366
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||| |||| |||||||||||||||||||| ||||||||| ||||||| |||||    
T  3276421 agggactaaaatccaaattcgctatatttgcagggaccaaaaacatattttagcct 3276366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 17517311 - 17517369
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||||||||| |||| |||| ||||||||| ||||||||| ||||||| |||||    
T  17517311 accagggaccaaaactcaaactcgccatatttgcagggaccaaaaacatattttagcct 17517369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 34995171 - 34995113
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||| |||||||| ||||||||||||||||||| ||| ||||| ||||||| |||||    
T  34995171 accaggaaccaaaactcaaattcgctatatttgcagggatcaaaagcatattttagcct 34995113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 1972457 - 1972400
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||    
T  1972457 accagagactaaaacccaaattcgctttatttgcagggaccaaaaacatattttagcc 1972400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 20393270 - 20393327
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||||||  |||||||||||||||||||||||| ||| ||||| ||||||| ||||    
T  20393270 accagggactgaaacccaaattcgctatatttgcagggatcaaaagcatattttagcc 20393327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 20896005 - 20895953
Alignment:
Q  276 aaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttat 327  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| || ||||||    
T  20896005 aaaactcaaattcgctatatttgcagggaccaaaaacatattttagtctttat 20895953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 3936635 - 3936568
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttattatat 332  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||| |||||    
T  3936635 accagggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctttaatatat 3936568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 3954109 - 3954051
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |||||    
T  3954109 accagggaccaaaacccaaattcgatatatttgcaaggaccaaaaacatattttagcct 3954051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 27098232 - 27098306
Alignment:
Q  130 ggctgccacatgtgcaaaatggaacagtcagcaggtgacacatatgcaaaaatcagacacatagacaagaaagtg 204  Q
    ||||||||| |||||| |||  ||||||||||| ||||||| |||| ||||||||||||||||  ||||||||||    
T  27098232 ggctgccacctgtgcataattaaacagtcagcaagtgacacctatgtaaaaatcagacacataagcaagaaagtg 27098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 27571131 - 27571191
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  27571131 accagggatcaaaacccaaactcgctatatttgcagggaccaaaatcatattttagccttt 27571191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 31540553 - 31540495
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  31540553 accaggtaccaaaacccaaattcgttatatttgcagggaccaaaaacatattttagcct 31540495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 15604063 - 15604103
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgcaggaccaaaa 309  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  15604063 agggaccaaaacccaaactcgccatatttgcaggaccaaaa 15604103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 4565450 - 4565392
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| |||||||||||| | |||| |||| ||||||| |||||    
T  4565450 accagggaccaaaacccaaactcgctatatttgtagggactaaaaacatattttagcct 4565392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 15599818 - 15599764
Alignment:
Q  270 gggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    ||||||||||||||||||||| ||||||| | ||||||||| ||||||| |||||    
T  15599818 gggaccaaaacccaaattcgccatatttgtagggaccaaaagcatattttagcct 15599764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 34911833 - 34911890
Alignment:
Q  269 agggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagccttt 325  Q
    ||||| ||||| ||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  34911833 agggatcaaaatccaaactcgctatatttgcagggaccaaaatcatattttagccttt 34911890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 3938062 - 3938126
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctttatta 329  Q
    |||||||||||||||| ||| | |||||||||||| |||| |||| ||||||| ||||| |||||    
T  3938062 accagggaccaaaacctaaacttgctatatttgcagggactaaaagcatattttagcctatatta 3938126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 5917429 - 5917473
Alignment:
Q  292 atatttgcagg-accaaaaccatatttaagcctttattatataat 335  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||||    
T  5917429 atatttgcagggaccaaaaccatattttagccttaattatataat 5917473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 27570109 - 27570061
Alignment:
Q  270 gggaccaaaacccaaattcgctatatttgc-aggaccaaaaccatattt 317  Q
    |||| ||||||||||| ||||||||||||| |||||||||| |||||||    
T  27570109 gggaacaaaacccaaactcgctatatttgcaaggaccaaaatcatattt 27570061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 11524 - 11583
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcctt 324  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||    
T  11524 accagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagcctt 11583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 10372 - 10315
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||| |||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  10372 accaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 10315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 30909 - 30967
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||    
T  30909 accagggaccaaaacccaaactcactatatttgcagggaccaaaaccatattttagcct 30967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 119650 - 119593
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  119650 accagggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 119593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 120987 - 121044
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||| ||||||| ||||    
T  120987 accagggaccaaaacccaaactcgttatatttgcagggaccaaaagcatattttagcc 121044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 433 - 490
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcc 322  Q
    |||||||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||    
T  433 accagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 6586 - 6622
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgcagg 302  Q
    |||||| ||||||||||||||||||||||||||||||    
T  6586 accaggcaccaaaacccaaattcgctatatttgcagg 6622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 9979 - 9921
Alignment:
Q  266 accagggaccaaaacccaaattcgctatatttgca-ggaccaaaaccatatttaagcct 323  Q
    |||||||||||||| ||||| |||||||||||||| ||| ||||| ||||||| |||||    
T  9979 accagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcct 9921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University