View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_10 (Length: 449)
Name: NF7960_low_10
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 40458525 - 40458108
Alignment:
| Q |
18 |
gtatgctcgaagactatggaaaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttga |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
40458525 |
gtatgctcgaagactatgagaaataataagagaacattgtgataagggatatgatggtttttgtgaggtcatatggataggagggagttggttttcttga |
40458426 |
T |
|
| Q |
118 |
tttggataactgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactc |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
40458425 |
tttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaatactttgatgctcctaatatactc |
40458326 |
T |
|
| Q |
218 |
cctgttctatacgtgtgagaggaaggaaatatgcatggtaccaacttcagtttgagaaatgacaatggcaatatattcaaactaatttttgatggaagga |
317 |
Q |
| |
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||||||| ||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40458325 |
cctgttc--tacgtgt--gaggaaggaactatgcatggtaccagcttcaatttgagcaatgacaatggcaatatattcaaactaattattgatggaagga |
40458230 |
T |
|
| Q |
318 |
catcattgtcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccg |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458229 |
catcattgtcttctaaaagaacgtaaaagcaattgtaatctatgaagactctatgataagagtgttgttacagtaggctgggtattagaactagtaaccg |
40458130 |
T |
|
| Q |
418 |
tcaaaccttcactccctatatt |
439 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40458129 |
tcaaaccttcactccctatatt |
40458108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 43408387 - 43408804
Alignment:
| Q |
18 |
gtatgctcgaagactatggaaaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttga |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
43408387 |
gtatgctcgaagactatgagaaataataagagaacattgtgataagggatatgatggtttttgtgaggtcatatggataggagggagttggttttcttga |
43408486 |
T |
|
| Q |
118 |
tttggataactgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactc |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
43408487 |
tttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaatactttgatgctcctaatatactc |
43408586 |
T |
|
| Q |
218 |
cctgttctatacgtgtgagaggaaggaaatatgcatggtaccaacttcagtttgagaaatgacaatggcaatatattcaaactaatttttgatggaagga |
317 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
43408587 |
cctgttc--tacgtgt--gaggaaggaactatgcatggtaccagcttcaatttgagcaatgacaatggcaatatattcaaactaattattgatggaagga |
43408682 |
T |
|
| Q |
318 |
catcattgtcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43408683 |
catcattgtcttctaaaagaacgtaaaagcaattgtaatctatgaagactctatgataagagtgttgttacagtaggctgggtattagaactagtaaccg |
43408782 |
T |
|
| Q |
418 |
tcaaaccttcactccctatatt |
439 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
43408783 |
tcaaaccttcactccctatatt |
43408804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 37667778 - 37668185
Alignment:
| Q |
18 |
gtatgctcgaagactatggaaaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttga |
117 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37667778 |
gtatgctcgaagactatagaaaataataggagaacattgtgataagggatatgatggtttgcgtgaggtcatatggataggagggagtttgttttcttga |
37667877 |
T |
|
| Q |
118 |
tttggataactgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactc |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37667878 |
tttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaactagaataccttgatgctcataatatactc |
37667977 |
T |
|
| Q |
218 |
cctgttctatacgtgtgagaggaaggaaatatgcatggtaccaacttcagtttgagaaatgacaatggcaatatattcaaactaatttttgatggaagga |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
37667978 |
cctgttc--tacgtgtgagaggaaggaaatatgcatggtacc------------agcaatgacaatgggaatatattcaaactaattattgatggaagga |
37668063 |
T |
|
| Q |
318 |
catcattgtcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37668064 |
catcattgtcttctaaaagaacgtaaaagcaattgcaatctatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccg |
37668163 |
T |
|
| Q |
418 |
tcaaaccttcactccctatatt |
439 |
Q |
| |
|
|| ||||||||||||||||||| |
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| T |
37668164 |
tctaaccttcactccctatatt |
37668185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 25004433 - 25004321
Alignment:
| Q |
326 |
tcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaacct |
425 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
25004433 |
tcttctaaaagaaaaccaaagaaattgtgatttatgaagaatccatgataagagtgtggttac-gtaggctgggtattagaactagtaaccgtcaaacct |
25004335 |
T |
|
| Q |
426 |
tcactccctatatt |
439 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25004334 |
tcactccctatatt |
25004321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 16474567 - 16474455
Alignment:
| Q |
326 |
tcttctaaaagaacgtaaaagcaattgtaatttatgaagactccatgataagagtgttgttacagtaggctgggtattagaactagtaaccgtcaaacct |
425 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16474567 |
tcttctaaaagaaaaccaaagaaattgtgatttatgaagaatccatgataagagtgtggttac-gtaggctgggtattagaactagtaaccgtcaaacct |
16474469 |
T |
|
| Q |
426 |
tcactccctatatt |
439 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16474468 |
tcactccctatatt |
16474455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 11968507 - 11968540
Alignment:
| Q |
31 |
ctatggaaaataataagagaacattgtgataagg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11968507 |
ctatggaaaataataagagaacattgtgataagg |
11968540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 22403242 - 22403195
Alignment:
| Q |
165 |
accaaactaatgaattcaaggaactagaataccttgatgctcataata |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
22403242 |
accaaactaatgaattcaaggaattagaataccttgatggtcataata |
22403195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 22403344 - 22403246
Alignment:
| Q |
38 |
aaataataagagaacattgtgataagggatatgatggtttgtgtgaggtcatatggataggagggagtttgttttcttgatttggataactgtattgatg |
137 |
Q |
| |
|
||||||||||||||| || ||||||||||| | |||| |||| | |||||| | |||||| ||||||||||||||||||||||| |||||| ||| |
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|
| T |
22403344 |
aaataataagagaactttttgataagggatg----gttttgcgtgaagccatatgcgtgggagggggtttgttttcttgatttggataattgtattaatg |
22403249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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