View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_11 (Length: 419)
Name: NF7960_low_11
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 50427873 - 50428273
Alignment:
| Q |
1 |
aacatgctcttctacattcacgaccacttcaccggtgaaaacacgtcggcagtcaccgttgccggtataaatggacccaactttaatatccaacacttcg |
100 |
Q |
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| T |
50427873 |
aacatgctcttctacattcacgaccacttcaccggtgaaaacacgtcggcagtcaccgttgccggtataaatggacccaactttaatatccaacacttcg |
50427972 |
T |
|
| Q |
101 |
gcaccgtggcaataattgatgatccagtaacagagggacccgcaatggattcaacactccttggcagtgctcagggcgtgtacgtaaattcgcagcttga |
200 |
Q |
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| T |
50427973 |
gcaccgtggcaataatcgatgatccagtaacagagggacccgcaatggattcaacactccttggcagtgctcagggcgtgtacgtaaattcgcagcttga |
50428072 |
T |
|
| Q |
201 |
tagcaaagcagtgtacatggttttctcagtgatattcacttctggtaagtacataggaagcacattggagatgcaaggatatagtttatatacaataaag |
300 |
Q |
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| T |
50428073 |
tagcaaagcagtgtacatggttttctcagtgatattcacttctggtaagtacataggaagcacattggagatgcaaggatatagtttatatacaacaaag |
50428172 |
T |
|
| Q |
301 |
gaaagagaatttgggattgtttctggcacaggttattttcggtttgttaaagggtatgcggttatggaaacacagtccgtggatttagctacactgcgaa |
400 |
Q |
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| T |
50428173 |
gaaagagaatttgggattgtttctggcacaggttattttcggtttgttaaagggtatgcggttatggaaacacagtccgtggatttagctacactgcgaa |
50428272 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
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| |
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| T |
50428273 |
c |
50428273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 88 - 388
Target Start/End: Original strand, 50422787 - 50423087
Alignment:
| Q |
88 |
atccaacacttcggcaccgtggcaataattgatgatccagtaacagagggacccgcaatggattcaacactccttggcagtgctcagggcgtgtacgtaa |
187 |
Q |
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|||| |||||| |||||||| || ||| |||| ||||||||||| |||||||| |||||||||||| |||| | || || ||||| ||| |||| ||| |
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| T |
50422787 |
atcctacactttggcaccgtagctatagttgacgatccagtaaccgagggacctacaatggattcaaaactcatcggtagagctcaaggcacgtacataa |
50422886 |
T |
|
| Q |
188 |
attcgcagcttgatagcaaagcagtgtacatggttttctcagtgatattcacttctggtaagtacataggaagcacattggagatgcaaggatatagttt |
287 |
Q |
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|||||||||||||| | ||||| |||||||||||||||| ||||||||||| ||||| |||| | ||||||||| |||||||| ||||||| | | | |
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| T |
50422887 |
attcgcagcttgatggtaaagctttgtacatggttttctcggtgatattcacagctggtgagtatagaggaagcaccttggagattcaaggatctgatat |
50422986 |
T |
|
| Q |
288 |
atatacaataaaggaaagagaatttgggattgtttctggcacaggttattttcggtttgttaaagggtatgcggttatggaaacacagtccgtggattta |
387 |
Q |
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|| |||| |||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| |||| | ||||||||||| ||| | |||||||| |
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| T |
50422987 |
attcacaacgaaggaacgagaatttggaattgtttcaggcacaggttactttcggtttgttaaaggctatgggattatggaaacagagttcatggattta |
50423086 |
T |
|
| Q |
388 |
g |
388 |
Q |
| |
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| |
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|
| T |
50423087 |
g |
50423087 |
T |
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