View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_12 (Length: 403)
Name: NF7960_low_12
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 52446111 - 52445749
Alignment:
| Q |
14 |
cagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaaca |
113 |
Q |
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| T |
52446111 |
cagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaaca |
52446012 |
T |
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| Q |
114 |
taactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatca |
213 |
Q |
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| T |
52446011 |
caactatacattatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacatgaag--------agtaaatcaaacatcaacatcatca |
52445920 |
T |
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| Q |
214 |
tacgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactca |
313 |
Q |
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| T |
52445919 |
tacgtgtcagggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttttagacaaatgtgttagtactca |
52445820 |
T |
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| Q |
314 |
atagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtcttta |
384 |
Q |
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| T |
52445819 |
atagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtcttta |
52445749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 33 - 341
Target Start/End: Complemental strand, 52447031 - 52446722
Alignment:
| Q |
33 |
attgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattg |
132 |
Q |
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| T |
52447031 |
attgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattg |
52446933 |
T |
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| Q |
133 |
tgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcat----------acgtgtca |
222 |
Q |
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| T |
52446932 |
tggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaaatcaaacatcaatatcatcgtacataagtgaacgtatca |
52446841 |
T |
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| Q |
223 |
cggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgt |
322 |
Q |
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| T |
52446840 |
aggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacctaaaacttgtagacagatatgttagtgcttaataatttgt |
52446741 |
T |
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| Q |
323 |
aagaagaaattaaacatat |
341 |
Q |
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| T |
52446740 |
atgaataaattaaacatat |
52446722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 258 - 378
Target Start/End: Complemental strand, 52447786 - 52447666
Alignment:
| Q |
258 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
357 |
Q |
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| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
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| Q |
358 |
gataaggtgtgtataaatatg |
378 |
Q |
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| T |
52447686 |
gataagatgtgtattaatatg |
52447666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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