View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_14 (Length: 393)
Name: NF7960_low_14
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 50511317 - 50511145
Alignment:
| Q |
20 |
gagagtgtacaatattcacacacattaccaaaaaacatttgaagaaaagttttgttatccatcacgaatattcagttcacacactttgtccattaataat |
119 |
Q |
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| T |
50511317 |
gagagtgtacaatattcacacacattaccaaaaaacatttgaagaaaagttttgttatccatcacgaatattcagttcacacactttgtccattaataat |
50511218 |
T |
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| Q |
120 |
ttatgctacacgcctacaaatctgtaaaatactttctgttatatagtgtttttaaactcttacttatatacat |
192 |
Q |
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| T |
50511217 |
ttatgctacacgcctacacctctgtaaaatactttctgttatatagtgtttttaaactcttacttatatacat |
50511145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 219 - 378
Target Start/End: Complemental strand, 50511128 - 50510963
Alignment:
| Q |
219 |
ctcttacttatatacatggacggacaaccataaattatggggtaaacgaccccactaacaaaaaggttgattgatgatgattatcacagaattgtagttg |
318 |
Q |
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| T |
50511128 |
ctcttacttatatacatggacggacaaccataaattatggggtaaacgaccccactaacaaaaaggttgattgataatgatta---------tgtagttg |
50511038 |
T |
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| Q |
319 |
aatttaac---------------aaaaatatcttaacaaaaaattgatgttatggataggtgtgcaagtatgtat |
378 |
Q |
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| T |
50511037 |
aatttaacaaaaaattgaggaaaaaaaatatcttaacaaaaaattgatgttatggataggtgtgcaagtatgtat |
50510963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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