View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_15 (Length: 387)
Name: NF7960_low_15
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 35978665 - 35978549
Alignment:
| Q |
20 |
ccatttgggtgagaagcagatgcaagtgataccttaaggcttaaagtaagggtgcgtttgtttactatcataaaaaatcagttttttaagatttgaagct |
119 |
Q |
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| T |
35978665 |
ccatttgggtgagaagcagatgcaagtgataccttaaggcttaaagtaagggtgcgtttgtttactatcataaaaaatcagttttttaagatttgaagct |
35978566 |
T |
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| Q |
120 |
cagttcgtcttaaaaaa |
136 |
Q |
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| T |
35978565 |
cagttcgtcttaaaaaa |
35978549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 35978389 - 35978303
Alignment:
| Q |
293 |
tatgatattaggaattaataccacaatgaagtgaattttcttacaactctgcgtagaataggctccagtgatgaacacaggttctgc |
379 |
Q |
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| T |
35978389 |
tatgatattaggaattaataccacaatgaagtgaattttcttacaactctgcgtagaataggctccagtgatgaacacagtttctgc |
35978303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 2964105 - 2964180
Alignment:
| Q |
304 |
gaattaataccacaatgaagtgaattttcttacaactctgcgtagaataggctccagtgatgaacacaggttctgc |
379 |
Q |
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| T |
2964105 |
gaatgaataccacaatcaacttaattttcttacaactcttcgtagaataggctccagcgatgagcaaagtttctgc |
2964180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 39192609 - 39192565
Alignment:
| Q |
75 |
gtttgtttactatcataaaaaatcagttttttaagatttgaagctc |
120 |
Q |
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| T |
39192609 |
gtttgtttactatcataaaaa-tcaattttttaagatttgaagctc |
39192565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 11088327 - 11088371
Alignment:
| Q |
76 |
tttgtttactatcataaaaaatcagttttttaagatttgaagctc |
120 |
Q |
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| T |
11088327 |
tttgtttactatcataaaaaatcatttttctaagatttaaagctc |
11088371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 34590347 - 34590304
Alignment:
| Q |
75 |
gtttgtttactatcataaaaaatcagttttttaagatttgaagctc |
120 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
34590347 |
gtttgtttactatcata-aaaatca-ttttttaagatttgaagctc |
34590304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 34790491 - 34790447
Alignment:
| Q |
75 |
gtttgtttactatcataaaaaatcagttttttaagatttgaagctc |
120 |
Q |
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|||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
34790491 |
gtttgtttactaacataaaaa-tcatttttttaagatttgaagctc |
34790447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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