View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_16 (Length: 381)
Name: NF7960_low_16
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 19470039 - 19469666
Alignment:
| Q |
1 |
tttggtgttatttcagcacctaatccagagttaagggaattggttgttttcttgcatggtgatgaagatactagcttgaaagaaaaaccccttgcttcat |
100 |
Q |
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| T |
19470039 |
tttggtgttatttcagcacctaatccagagttaagggaattggttgttttcttgcatggtgatgaagatactaacttgaaagaaaaaccccttgcttcat |
19469940 |
T |
|
| Q |
101 |
tacaggttaatgttctcttgagctcttttaaattcaacccctacatattacaaatatgctcttcatattcataagggtctt-acattattcacacttttc |
199 |
Q |
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| T |
19469939 |
tacaggttaatgttctctagagctcttttaaattcaacccctacatattacaaatatgctcttcatattcataagggtcttaacattattcacacttttc |
19469840 |
T |
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| Q |
200 |
catctctatggttaaattataacaatgtcataggtatattgggtttcgattaaaatatgacagagtcgcagactaaatcattctctttaaaacgttttat |
299 |
Q |
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| T |
19469839 |
catctctatggttaaattataacaatgtcataggtatattgggtttcgattaaaatatgacagagtcgcagactaaatcattctctttaaaacgttttat |
19469740 |
T |
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| Q |
300 |
gactctaaattgtgcgag-------aaacagctcgctcgtatgcnnnnnnncaagaaatattgctttcttttct |
366 |
Q |
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| T |
19469739 |
gactctaaattgtgcgagcagacaaaaacagctcgctcatatgctttttttcaagaaatattgctttcttttct |
19469666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19415555 - 19415421
Alignment:
| Q |
1 |
tttggtgttatttcagcacctaatccagagttaagggaattggttgttttcttgcatggtgatgaagatactagcttgaaaga-aaaaccccttgcttca |
99 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| | ||||||| ||||| ||||||||| |
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| T |
19415555 |
tttggtcttatttgagcacctaatccatagttaagggaattcgttgtttttttgcatggtgatgaagatactgacctgaaagaaaaaacgccttgcttcc |
19415456 |
T |
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| Q |
100 |
ttacaggttaatgttctcttgagctcttttaaatt |
134 |
Q |
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| | ||||||||||||||||||| ||||||||||| |
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| T |
19415455 |
tcaaaggttaatgttctcttgagttcttttaaatt |
19415421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 19415356 - 19415222
Alignment:
| Q |
192 |
cacttttccatctctatggttaaattataacaatgtcataggtatattgggtttcgattaaaatatgacagagt--------cgcagactaaatcat--t |
281 |
Q |
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||||||| ||||||||||||||||| ||||| ||||||||||| ||| ||| ||||||||||||| ||||| ||| ||||| ||||| | |
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| T |
19415356 |
cactttttcatctctatggttaaatgctaacacattcataggtata-tggattttgattaaaatatgatagagttgtagagacgcggactacatcattct |
19415258 |
T |
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| Q |
282 |
ctctttaaaacgttttatgactctaaattgtgcgag |
317 |
Q |
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| T |
19415257 |
ctctttaaaatgttttatgactctaaattatgcgag |
19415222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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