View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_2 (Length: 626)
Name: NF7960_low_2
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 19964016 - 19964592
Alignment:
| Q |
1 |
ttacgtcaaaccattcaccgaaagatttgactgagaagattgaggacattgtaatagaaatgggatttagagttcataagaaaaatggaaaagtaagtga |
100 |
Q |
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| T |
19964016 |
ttacgtcaaaccattcaccgaaagatttgactgagaagattgaggacattgtaatagaaatgggatttaaagttcataagaaaaatggaaaagtaagtga |
19964115 |
T |
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| Q |
101 |
ccaagtaattgttgattatatttgttaatcataattgaaaaactggttttgctaaacattgcatctacaacttgaaatttcagttgaaagtgatacaaga |
200 |
Q |
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| T |
19964116 |
ccaagtaattgttgattatatttgttaatcataattgaaaaactggttttgctaaacattgcatctacaacttgaaatttcagttgaaagtgatacaaga |
19964215 |
T |
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| Q |
201 |
ggataaagctcataaaagtctagatagcctctcagtcacagcagaggtaaataaaagcttgtcgagaatgagagctaaaatctcgattttttcaattttc |
300 |
Q |
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| T |
19964216 |
ggataaagctcataaaagtctagatagcctctcagtcgcagcagaggtaaataaaagcttgtcgagaatgagagctaaaatctcga-tttttcaattttc |
19964314 |
T |
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| Q |
301 |
atatatttatattgctgacattatgaaactattttcacttcaattgtaacaggtttttgaagttggtccatctttgtatgtagtagaactaaggaagtct |
400 |
Q |
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| T |
19964315 |
atata--tagattgctgacattatgaaactattttcacttcaattgcaacaggtttttgaagttggtccatctttgtatgtagtagaactaaggaagtct |
19964412 |
T |
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| Q |
401 |
tatggagatgcttctgtatatagacaagtatgtatattactgctatctctttctatgcacactttctgagaaagtccgaggctaatatgtagnnnnnnnn |
500 |
Q |
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| T |
19964413 |
tatggagatgcttctgtatatagacaagtatgtatattactgctatcactttctatgcactctttctgagaaaatctgaggctaacatgtag-ttttttt |
19964511 |
T |
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| Q |
501 |
nctatgatatttgatgtagttatgcaaaaggttatcaaacgacttgggtatagccgaggcggcagagctagtaagctcagaaag |
584 |
Q |
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| T |
19964512 |
tcgatgatatttgatgtagttatgcaaaaggttatcaaacgacttgggtatagccgaggtggcagag---gtaagctcagaaag |
19964592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 543 - 615
Target Start/End: Original strand, 19964599 - 19964671
Alignment:
| Q |
543 |
cttgggtatagccgaggcggcagagctagtaagctcagaaagcctagacatatgaagaaaatacattagaagc |
615 |
Q |
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| T |
19964599 |
cttgggtatagccgaggcggcagagctagtaagctcagaaagcctagacatatgaagaaaatacattagaagc |
19964671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 347 - 426
Target Start/End: Complemental strand, 51096616 - 51096537
Alignment:
| Q |
347 |
taacaggtttttgaagttggtccatctttgtatgtagtagaactaaggaagtcttatggagatgcttctgtatatagaca |
426 |
Q |
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| T |
51096616 |
taacaggtttttgaaataagttcatcattgtatgtagtagagttaaggaagtgttatggagatgcctctgtatatagaca |
51096537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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