View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_20 (Length: 362)
Name: NF7960_low_20
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 51846111 - 51846451
Alignment:
| Q |
17 |
aagacctgccacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactc |
116 |
Q |
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| T |
51846111 |
aagacctgccacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactc |
51846210 |
T |
|
| Q |
117 |
aagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatc |
216 |
Q |
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| T |
51846211 |
aagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatc |
51846310 |
T |
|
| Q |
217 |
attcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtacagatgttgttcaatgggtgttcacagcaatttctgaga |
316 |
Q |
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| T |
51846311 |
attcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtactgatgttgttcaatgggtgttcacagcaatttctgaga |
51846410 |
T |
|
| Q |
317 |
gaagagaagctgaattgattgatccagagttaacaccaaac |
357 |
Q |
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| T |
51846411 |
gaagagaagctgaattgattgatccagagttaacagcaaac |
51846451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 349
Target Start/End: Complemental strand, 18627563 - 18627242
Alignment:
| Q |
28 |
catggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactcaagtcatgcaa |
127 |
Q |
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| T |
18627563 |
catggaaacctcaaatcaagcaatgttctactaactgatgattatgagcctcttttaagtgactatgcttttcaaccactaatcaaccctagcattgcag |
18627464 |
T |
|
| Q |
128 |
cacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatcattcttgaaat |
227 |
Q |
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||| ||||||||||||||||||| || |||||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
18627463 |
tgcaatcaatgtttgcatacaaaacaccggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaact |
18627364 |
T |
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| Q |
228 |
cattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtacagatgttgttcaatgggtgttcacagcaatttctgagagaagagaagct |
327 |
Q |
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| T |
18627363 |
cattacaggaaaattcccttctcagtatcatagtaacggtaaaggtggaaccgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagct |
18627264 |
T |
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| Q |
328 |
gaattgattgatccagagttaa |
349 |
Q |
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|||||||||||||| ||||||| |
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| T |
18627263 |
gaattgattgatcctgagttaa |
18627242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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