View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_21 (Length: 360)
Name: NF7960_low_21
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 511812 - 512142
Alignment:
| Q |
18 |
ggttggtggtaacatattcaggnnnnnnncagctttgcatttgcgacaggtttccgtccgctggtttgcatttgcgtgggccgaaaattcgccacaaatg |
117 |
Q |
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| T |
511812 |
ggttggtggtaacatattcaggaaaaaaacagctttgcatttgcgacaggtttccgtccactggtttgcatttgcatgggccgaaaattcgccacaaatg |
511911 |
T |
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| Q |
118 |
tttgcgagggaaatatttgcatgggagctttgtccgccgcaaatttgcatttgcgtgggctttttgtgtttttgtgtgggattttgatacacgctaattc |
217 |
Q |
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| T |
511912 |
tttgcgagggcaatatttgcatgggagctttgtccaccgcaaatttgcatttgcgtgggctttt--------tgtgtgggattttgatacacgctaattc |
512003 |
T |
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| Q |
218 |
caaacattcttgcagtggtactactacaacaaatgctgaagaaatatgggtgcaaagaagaacttgtataatgtcata-ttttgtaagcaaatcaaaag- |
315 |
Q |
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| T |
512004 |
catacattcttgcagtggtactactacaacaaatgctgaagaaatatgggtgcaaagaagaacttgtataatgtcatacttttgtaagcaaatcaaaagt |
512103 |
T |
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| Q |
316 |
ttttcagaaacatcttgttctttcctacttgatattctt |
354 |
Q |
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| T |
512104 |
ttttcagaaacatcttgttctttccttcttgattttctt |
512142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 5675988 - 5675914
Alignment:
| Q |
107 |
cgccacaaatgtttgcgagggaaatatttgcatgggagctttgtccgccgcaaatttgcatttgcgtgggctttt |
181 |
Q |
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| T |
5675988 |
cgccacaaatgtttgcgagggcaatatttgcaagggagctttgtccgccgcaaatttgtgtttgcgtgggatttt |
5675914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 5701040 - 5700966
Alignment:
| Q |
107 |
cgccacaaatgtttgcgagggaaatatttgcatgggagctttgtccgccgcaaatttgcatttgcgtgggctttt |
181 |
Q |
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| T |
5701040 |
cgccacaaatgtttgcgagggcaatatttgcaagggagctttgtccgccgcaaatttgtgtttgcgtgggatttt |
5700966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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