View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_22 (Length: 357)
Name: NF7960_low_22
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_22 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 12533368 - 12533042
Alignment:
| Q |
20 |
aatggtgccctatagaacagaagtagtaaatgctgatgttttttgctcaatgcacttaccattattgcaaaaatccttgatatactaaagacagctactt |
119 |
Q |
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| T |
12533368 |
aatggtgccctatagaacagaagtagtaaatgatgatgttttttgctcaatgcacttatcattattgcaaaaatccttgatatagtaaagacagctactt |
12533269 |
T |
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| Q |
120 |
cattttatatttgtggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaattgaagataagca |
219 |
Q |
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| T |
12533268 |
cagtttatatttgtgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaattgaagataagca |
12533169 |
T |
|
| Q |
220 |
ttggtataagtagtgtgctcaatgtaggcctacagctgatgaaattactcctttcagttctcaatgtaggttggcttacgctatgtgatcaggacctcaa |
319 |
Q |
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| T |
12533168 |
ttggtataagtagtgtgctcagtgtaggcctacacctgatgaaataactcctttcagttctcaatgtacgttggcttacgctatgtgataaggacctcaa |
12533069 |
T |
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| Q |
320 |
cattcctaaaaaattagcttcttctca |
346 |
Q |
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| T |
12533068 |
cattcctaaaaaattagcttcttctca |
12533042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 12534356 - 12534156
Alignment:
| Q |
20 |
aatggtgccctatagaacagaagtagtaaatgctgatgttttttgctcaatgcacttaccattattgcaaaaatccttgatatactaaagacagctactt |
119 |
Q |
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| T |
12534356 |
aatggtgccctatagaacagaagtagtaaatgatgatgttttttgctcaatgcacttatcattattgcaaaaatccttgatatattaaagacagctactt |
12534257 |
T |
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| Q |
120 |
cattttatatttgtggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaattgaagataagca |
219 |
Q |
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|| |||||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12534256 |
cagtttatatttgtgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaattgaagataagca |
12534157 |
T |
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| Q |
220 |
t |
220 |
Q |
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| T |
12534156 |
t |
12534156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 30099 - 30419
Alignment:
| Q |
20 |
aatggtgccctatagaacagaagtagtaaatgctgatgttttttgctcaatgcacttaccattattgcaaaaatccttgatatactaaagacagctactt |
119 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099 |
aatggtgccctatagaacagaagtagtaaatgc--atgttttttgctcaatgcacttatcattattgcaaaaatccttgatatactaaagacagctactt |
30196 |
T |
|
| Q |
120 |
cattttatatttgtggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaattgaagataagca |
219 |
Q |
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|| |||||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30197 |
cagtttatatttgtgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaattgaagataagca |
30296 |
T |
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| Q |
220 |
ttggtataagtagtgtgctcaatgtaggcctacagctgatgaaattactcctttcagttctcaatgtaggttggcttacgctatgtgatcaggacctcaa |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
30297 |
ctggtataagtagtgtgctcaatgtaggcctacacctgatgaaataactcctttcagttctcaatgtaggctggcttacgctatgtgataaggacctcaa |
30396 |
T |
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| Q |
320 |
cattcctaaaaaattagcttctt |
342 |
Q |
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||||||||||||||||||||||| |
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| T |
30397 |
cattcctaaaaaattagcttctt |
30419 |
T |
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