View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_low_23 (Length: 356)

Name: NF7960_low_23
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_low_23
NF7960_low_23
[»] chr5 (10 HSPs)
chr5 (112-341)||(13852955-13853198)
chr5 (115-183)||(10221940-10222008)
chr5 (44-110)||(13853227-13853294)
chr5 (269-341)||(13883397-13883469)
chr5 (269-339)||(14398095-14398165)
chr5 (60-113)||(10221843-10221897)
chr5 (8-61)||(13853311-13853364)
chr5 (282-341)||(14391953-14392012)
chr5 (8-56)||(10220615-10220663)
chr5 (270-324)||(14396221-14396275)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 112 - 341
Target Start/End: Complemental strand, 13853198 - 13852955
Alignment:
Q  112 ttaacattaagtatacttatttcaactttttacaacctattgattaccgatctcctatgagtccaatgatgc--------------gaggagatagattt 197  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||              ||||||||||||||    
T  13853198 ttaacattaagtatgcttatttcaactttttacaacctattgattacggatctcctatgagtccaatgatgcctgagaaattgtgcgaggagatagattt 13853099  T
Q  198 tgatcctgattttgatttgatcaaaatcataagaattttactaatctatgatagcctactaattttgattctttactgtgtgcatgacaccaaacttgca 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13853098 tgatcctgattttgatttgatcaaaatcataagaattttactaatctatgataacctactaattttgattctttactgtgtgcatgacaccaaacttgca 13852999  T
Q  298 ttcaaacagatgcagaacacatactttcactataggtcaattgt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13852998 ttcaaacagatgcagaacacatactttcactataggtcaattgt 13852955  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 10221940 - 10222008
Alignment:
Q  115 acattaagtatacttatttcaactttttacaacctattgattaccgatctcctatgagtccaatgatgc 183  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  10221940 acattaagtatgcttatttcaactttttacaatctattgattaccgatctcctacgagtccaatgatgc 10222008  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 13853294 - 13853227
Alignment:
Q  44 tgtcatgtcatgcttatgtaaggatcaatcctcct-ttttctggtccatatccaatgttaataagaaa 110  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13853294 tgtcatgtcatgcttatgtaaggatcaatcctcctcttttcttgtccatatccaatgttaataagaaa 13853227  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 13883469 - 13883397
Alignment:
Q  269 tttactgtgtgcatgacaccaaacttgcattcaaacagatgcagaacacatactttcactataggtcaattgt 341  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||    
T  13883469 tttactgtgtgcttgacaccaaacttgcattcaaacagatgaagaacacatactttgactagagatcaattgt 13883397  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 14398095 - 14398165
Alignment:
Q  269 tttactgtgtgcatgacaccaaacttgcattcaaacagatgcagaacacatactttcactataggtcaatt 339  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  14398095 tttactgtgtgattgacaccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaatt 14398165  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 10221843 - 10221897
Alignment:
Q  60 tgtaaggatcaatcctcct-ttttctggtccatatccaatgttaataagaaaatt 113  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  10221843 tgtaaggatcaatcctcctcttttctggtcaatatccaatgttaataagaaaatt 10221897  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 13853364 - 13853311
Alignment:
Q  8 ataatactcatgatgaagcaacttggctttccaatatgtcatgtcatgcttatg 61  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  13853364 ataatattcatgattaagcaacttggttttccaatatgtcatgtcatgcttatg 13853311  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 14391953 - 14392012
Alignment:
Q  282 tgacaccaaacttgcattcaaacagatgcagaacacatactttcactataggtcaattgt 341  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||   |||||||||||    
T  14391953 tgacaccaaaattgcattcaaacagatgcagaacacatgctttcacccgaggtcaattgt 14392012  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 10220615 - 10220663
Alignment:
Q  8 ataatactcatgatgaagcaacttggctttccaatatgtcatgtcatgc 56  Q
    |||||| ||||||| ||| ||||||||||||||||||||||| ||||||    
T  10220615 ataatattcatgattaagaaacttggctttccaatatgtcatatcatgc 10220663  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 14396221 - 14396275
Alignment:
Q  270 ttactgtgtgcatgacaccaaacttgcattcaaacagatgcagaacacatacttt 324  Q
    ||||| ||||| |||| ||||||||||||| ||||| |||||||||| |||||||    
T  14396221 ttactatgtgcttgacgccaaacttgcattgaaacaaatgcagaacatatacttt 14396275  T

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