View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_24 (Length: 348)
Name: NF7960_low_24
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 34895054 - 34895392
Alignment:
| Q |
8 |
tttttctgttattttactgatcacacaaaacaaaacaagcccagaaagaaaagatataaactttgaaatgggtttaatcaaaatctctgttttatgcact |
107 |
Q |
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| T |
34895054 |
tttttctgttattttactgatcacacaaaacaaaacaagcccagaaagaaaagatataaactttgaaatgggtttaatcaaaatctctgttttatgcact |
34895153 |
T |
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| Q |
108 |
tcaatgataaactactcatatcatgaggtttacatgcatcacaaaataggaacaagaagtgctcaaatttaggagaccaaaaagtatgaactcttgacac |
207 |
Q |
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| T |
34895154 |
tcaatgataaactactcatatcatgaggtttacatgcatcacaaaataggaacaagaagtgctcaaatttaggagaccaaaaagtatgaactcttgacac |
34895253 |
T |
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| Q |
208 |
atactgactacattaaatgnnnnnnngattaaaactaaaaagatacgaaacttagatgaattttttaac-nnnnnnntacaccgacagttacaatagtag |
306 |
Q |
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| T |
34895254 |
atattgactacattaaatgtttttttgattaaaactaaaaagatacgaaacttagatgaatttttgaacaaaaaaaatacaccgacagttacaatagtag |
34895353 |
T |
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| Q |
307 |
attgaaacttgcaaggaaaagaaagagaatgtgaagaga |
345 |
Q |
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| T |
34895354 |
attgaaacttgcaaggaaaagaaagagaatgtgaagaga |
34895392 |
T |
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