View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7960_low_25 (Length: 343)
Name: NF7960_low_25
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_25 |
 | |
|
| [»] scaffold1738 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 8395957 - 8396296
Alignment:
| Q |
1 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaaaatattctaagacatataaatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8395957 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaaaatattctaagacatataaattatt |
8396056 |
T |
|
| Q |
101 |
taattcattttttaatgtgttattctttcattctttgtagttacctgactttatagaaaagaaaatttgtttagatcaacttacacat----atgcttct |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
8396057 |
taattcattttttaatgtgttattctttcattctttgtagttacctgactttatagaaaagaaactttgtttagatcaacttacacatatgcatgcttct |
8396156 |
T |
|
| Q |
197 |
agttcttactgttctgtttttctttt-----------tcttgcatgcgtatttgtatagagtgcatgcaataagaaatcttgtattaagacatcttttgg |
285 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8396157 |
agttcttactgttctgtttttctttttctttttctggtcttgcatgcgtatttgtatagagtgcatgcaataagaaatcttgtattaagacatcttttgg |
8396256 |
T |
|
| Q |
286 |
caacatttattttgcgatatcttgtgcttttgtgacgggt |
325 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8396257 |
caacatttattttgcgagatcttgtgcttttgtgacgggt |
8396296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 8405614 - 8405451
Alignment:
| Q |
2 |
gagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaaaatattctaagacatataaatcattt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8405614 |
gagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaaaatattctaagacatataaattattt |
8405515 |
T |
|
| Q |
102 |
aattcattttttaatgtgttattctttcattctttgt-agttacctgactttatagaaaagaaa |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
8405514 |
aattcattttttaatgtgttattctttcattctttgtaagttacatgactttgtagaaaagaaa |
8405451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 8430886 - 8430796
Alignment:
| Q |
1 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaaaatattctaagacata |
91 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
8430886 |
agagctaagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaattttccagcaaaattttctaagacata |
8430796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8376271 - 8376345
Alignment:
| Q |
1 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||| | || || ||||||||||| ||||| |
|
|
| T |
8376271 |
agagctgagggaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaattgatgaatttgccagcaa |
8376345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8411735 - 8411661
Alignment:
| Q |
1 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||| || | || |||||||||||||| ||||| |
|
|
| T |
8411735 |
agagctgagggaacttgcctcaaaatcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaa |
8411661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8416819 - 8416753
Alignment:
| Q |
1 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaattt |
67 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
8416819 |
agagctgagggaacgtgccacaaaatcagcttcttgtcgcatcgaaggtgttgacatagatgaattt |
8416753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8433833 - 8433759
Alignment:
| Q |
1 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||| || | || |||||||||||||| ||||| |
|
|
| T |
8433833 |
agagctgagggaacttgcctcaaaatcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaa |
8433759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 103 - 177
Alignment:
| Q |
1 |
agagctgagggaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
103 |
agagctgagggaacttgcatcaaaatcagcttcttgtcgcatcgaaggtgttgacatagatgaatttgccagcaa |
177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University