View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_low_26 (Length: 339)

Name: NF7960_low_26
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_low_26
NF7960_low_26
[»] chr4 (13 HSPs)
chr4 (1-321)||(4925892-4926219)
chr4 (13-152)||(6649297-6649432)
chr4 (64-152)||(6535242-6535330)
chr4 (13-152)||(6794686-6794821)
chr4 (73-152)||(6834466-6834545)
chr4 (13-152)||(6814016-6814151)
chr4 (71-152)||(6589627-6589708)
chr4 (75-152)||(6624019-6624096)
chr4 (71-152)||(6499937-6500019)
chr4 (71-152)||(6547493-6547574)
chr4 (75-152)||(6751147-6751224)
chr4 (112-152)||(6771543-6771583)
chr4 (1-49)||(8413050-8413098)
[»] scaffold0373 (1 HSPs)
scaffold0373 (13-148)||(11486-11617)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 4925892 - 4926219
Alignment:
Q  1 aaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaacaaacgtgg 100  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4925892 aaatggacaaaagtgaatctattaagcttctctgttggcatgcattcaattaatcgaccagtaccgatagaagattttgctacacattcaacaaacgtgg 4925991  T
Q  101 ttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattttgctacactatgagatttgccatatacatatcttaaatgcatgtttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4925992 ttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattttgctacactatgagatttgccatatacatatcttaaatgcatgtttca 4926091  T
Q  201 aagaaacatatgccaaaggtgcttttgttttagagattattatgttgtatagaataaaattggtattatgttgtcaaag-------gtgtatgtatattc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  4926092 aagaaacatatgccaaaggtgcttttgttttagagattattatgttgtatagaataaaattggtattatgttgtcaaaggtgtatcgtgtatgtatattc 4926191  T
Q  294 tctaatgaagaaactgtgcagtgggaag 321  Q
    ||||||||||||||||||||||||||||    
T  4926192 tctaatgaagaaactgtgcagtgggaag 4926219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 6649297 - 6649432
Alignment:
Q  13 gtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtg 112  Q
    |||||||| || |||||||| ||||||||||||||||| ||    |||   || | ||||||||||||||||||||||||| | ||| ||| ||| | ||    
T  6649297 gtgaatctcttgagcttttcagttggcatgcattcaatcaa----ccaagtcctacaaaagattttgctacacattcaacagatgtgattgcttattctg 6649392  T
Q  113 ggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    |||||||||| |||||| || |||| ||||| ||||||||    
T  6649393 ggagattgcctctagcacttcaagtccttggttcctattt 6649432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 6535330 - 6535242
Alignment:
Q  64 ccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    |||||| ||||||||||||||||||||||  | ||| ||| ||| | |||||||||||| |||||| || |||| ||||||||||||||    
T  6535330 ccgatagaagattttgctacacattcaacggatgtgattgcttattctgggagattgcccctagcacttgaagtccttgggtcctattt 6535242  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 6794686 - 6794821
Alignment:
Q  13 gtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtg 112  Q
    |||||||| ||||||||||| ||||||||||||||||  ||    |||   || ||| || ||||||||| |||||||||| | ||| ||| ||| |  |    
T  6794686 gtgaatctcttaagcttttcagttggcatgcattcaagcaa----ccaagtccaatagaatattttgctaaacattcaacagatgtgattgcttactcag 6794781  T
Q  113 ggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    ||||||||||||||||| || |||||||||| ||||||||    
T  6794782 ggagattgccactagcacttgaagtacttggttcctattt 6794821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 6834466 - 6834545
Alignment:
Q  73 gattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    ||||||||||||||||||||| | ||| ||| ||| | ||| ||||||||||||||| || |||| ||||| ||||||||    
T  6834466 gattttgctacacattcaacagatgtgattgcttattctggaagattgccactagcacttgaagtccttggctcctattt 6834545  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 6814016 - 6814151
Alignment:
Q  13 gtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtg 112  Q
    |||||||| ||||||||||| ||||||||||||||    || | ||||   |||||| |||||||||||| ||||| |||| | ||| ||  ||| | ||    
T  6814016 gtgaatctcttaagcttttcagttggcatgcattc----aagcaaccaagtccgatagaagattttgctaaacatttaacagatgtgatttcttattctg 6814111  T
Q  113 ggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    || |||||||||||||| || |||| || |||||||||||    
T  6814112 ggggattgccactagcacttgaagtcctcgggtcctattt 6814151  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 6589708 - 6589627
Alignment:
Q  71 aagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    ||||||||||||| ||||||||| | ||| ||| ||| | |||| |||||||||||||| || |||| ||||| ||||||||    
T  6589708 aagattttgctacgcattcaacagatgtgattgcttattctgggggattgccactagcacttgaagtccttggatcctattt 6589627  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 6624096 - 6624019
Alignment:
Q  75 ttttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    ||||||||||||||||||| | ||| ||| ||| |  |||||||||||||||||| || |||| ||||||| ||||||    
T  6624096 ttttgctacacattcaacagatgtgattgcttattccgggagattgccactagcacttgaagttcttgggtgctattt 6624019  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 6500019 - 6499937
Alignment:
Q  71 aagattttgctacacattcaacaaacgtggttgtttaatgtgggagatt-gccactagcagttaaagtacttgggtcctattt 152  Q
    ||||||||||||||||||||| | | ||||||  ||| | |||| |||| |||||||||| || |||| ||||||||||||||    
T  6500019 aagattttgctacacattcaaaagatgtggtttcttattctgggggatttgccactagcacttgaagttcttgggtcctattt 6499937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 6547574 - 6547493
Alignment:
Q  71 aagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    ||||||||||||||||||  ||| || |||||| ||| | ||| ||||| ||||||||| || |||| ||||| ||||||||    
T  6547574 aagattttgctacacatttgacagacatggttgcttattctggaagatttccactagcacttgaagtccttggctcctattt 6547493  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 6751147 - 6751224
Alignment:
Q  75 ttttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    ||||||||||||||||| | | ||| ||| ||| | ||||||||| ||||||||| || |||| || |||||||||||    
T  6751147 ttttgctacacattcaaaagatgtgattgcttattctgggagattaccactagcacttgaagtcctcgggtcctattt 6751224  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 6771543 - 6771583
Alignment:
Q  112 gggagattgccactagcagttaaagtacttgggtcctattt 152  Q
    |||||||||||||||||| || |||| ||||||||||||||    
T  6771543 gggagattgccactagcacttgaagttcttgggtcctattt 6771583  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8413050 - 8413098
Alignment:
Q  1 aaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa 49  Q
    |||||||| || |||||||| | ||||||||| ||||||||||||||||    
T  8413050 aaatggacgaaagtgaatctctcaagcttttcagttggcatgcattcaa 8413098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 11617 - 11486
Alignment:
Q  13 gtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtg 112  Q
    |||||||| ||||||||||| ||||||||||||||||  ||    |||   || ||| || ||||||||| |||||||||| | ||| ||| ||| |  |    
T  11617 gtgaatctcttaagcttttcagttggcatgcattcaagcaa----ccaagtccaatagaatattttgctaaacattcaacagatgtgattgcttactcag 11522  T
Q  113 ggagattgccactagcagttaaagtacttgggtcct 148  Q
    ||||||||||||||||| || |||||||||| ||||    
T  11521 ggagattgccactagcacttgaagtacttggttcct 11486  T

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