View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7960_low_27 (Length: 329)
Name: NF7960_low_27
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 119 - 320
Target Start/End: Complemental strand, 14240075 - 14239874
Alignment:
| Q |
119 |
gtcgtgctttcaaaaacactaaccctaaccctaataacaacgctcagcagattcggaagcggagacggaactccaaaaacaagaaaaatgttcaaaatga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14240075 |
gtcgtgctttcaaaaacactaaccctaaccctaataacaacgctcagcagattcggaagcggagacggaactccaaaaacaagaaaaatgttcaaaatga |
14239976 |
T |
|
| Q |
219 |
cgatgatgaacctaattcgccgaattcagtacagaaagttgatgttagggttttgatttcgctgtttgagaaattagttagtgttatgggtttaattcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239975 |
cgatgatgaacctaattcgccgaattcagtacagaaagttgatgttagggttttgatttcgctgtttgagaaattagttagtgttatgggtttaattcat |
14239876 |
T |
|
| Q |
319 |
ct |
320 |
Q |
| |
|
|| |
|
|
| T |
14239875 |
ct |
14239874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University