View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_30 (Length: 327)
Name: NF7960_low_30
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 49225282 - 49224979
Alignment:
| Q |
1 |
aataagggaaagtgcatagtatgttgaagaataaccataagactcggttttacgacagaagtaacaaacaatgaggagtaataaacagaagccaaagccc |
100 |
Q |
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| T |
49225282 |
aataagggaaagtgcatagtatgttgaagaataaccataagactcggttttacgacagaagtaacaaacaatgaggagtaataaacagaagccaaagccc |
49225183 |
T |
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| Q |
101 |
aagaaccagactgctgcaatgctgaatacaggaactgctgtatatgccgctgactgtattcaataaaaaggaaaaatagtgagtggacttaatttttggt |
200 |
Q |
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| T |
49225182 |
aagaaccagactgctgcaatgctgaatacaggaactgctgtatatgccgctgactgtattcaataaaaaggaaaaatagtgagtggacttaatttttggt |
49225083 |
T |
|
| Q |
201 |
atgaaaattcaatactacaggactaactaaaaggctaatttaaacacctgaaaattatggttaatcacgtccaaaatcatggttaataagtgtagacaac |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49225082 |
atgaaaattcaatactgcaggactaactaaaaggctaatttaaacacctgaaaattatggttaatcatgtccaaaatcatggttaataagtgtagacaac |
49224983 |
T |
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| Q |
301 |
tggt |
304 |
Q |
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|||| |
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| T |
49224982 |
tggt |
49224979 |
T |
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