View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_31 (Length: 324)
Name: NF7960_low_31
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 6904007 - 6903701
Alignment:
| Q |
1 |
cattgaaaatattcagctttggattagtctatgtctctatgatatggtttgaagttaattactcgaaactgtgacattggattgttggagacgaaaggtc |
100 |
Q |
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| T |
6904007 |
cattgaaaatattcagctttggattagtctatgtctctgtgatatggtttgaagttaattactcgaaactgtgacattggattgttggagacgaaaggtc |
6903908 |
T |
|
| Q |
101 |
caaatacaacctccaagttagaactgaaactcgactaaaacaattatactcgagagcacttagacgtgtccaaatcaaatttaggtgtctagaatcattt |
200 |
Q |
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| T |
6903907 |
caaatacaacctccaagttagaactgaaactcgactaaaacaattatacttgagagcacttagacgtgtccaaatcaaatttaggtgtcaggaatcattt |
6903808 |
T |
|
| Q |
201 |
ttatctcttgaaaaactacttcaaaacatcaaattggggaaatctcaaacgt-ttaccctccttttgaagtttggtattatagtataactaatgtgctgt |
299 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6903807 |
ttgtctcttg-aaaactacttcaaaacatcaaattggggaaatctcaaacgtgttacccttcttttgaagtttggtattatagtataactaatgtgctgt |
6903709 |
T |
|
| Q |
300 |
tatcactg |
307 |
Q |
| |
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|||||||| |
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| T |
6903708 |
tatcactg |
6903701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 204483 - 204792
Alignment:
| Q |
1 |
cattgaaaatattcagctttggattagtctatgtctctatgatatggtttgaagttaattactcgaaactgtgacattggattgttggagacgaaaggtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
204483 |
cattgaaaatattcagctttggattagtctatgtctctgtgatatggtttgaagttaattactcgaaactgtgacattggattgttggagacgaaaggtc |
204582 |
T |
|
| Q |
101 |
caaatacaacctccaagttagaactgaaactcgactaaaacaattatactcgagagcacttagacgtgtccaaatcaaatttaggtgtctagaatca--t |
198 |
Q |
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| T |
204583 |
caaatacaacctccaagttagaactgaaactcgggtaaaacaattatacttgagagcacttagacgtgtccaaatcaaatttaggtgtctagaatcattt |
204682 |
T |
|
| Q |
199 |
ttttatctcttgaaaaactacttcaaaacatcaaattggggaaatctcaaacgt-ttaccctccttttgaagtttggtattatagtataactaatgtgct |
297 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
204683 |
ttttttatcttgaaaaactacttcaaaacatcaaattggggaaatctcaaacgtgttaccctccttttgaagtttggtattatagtataaccaatgtgct |
204782 |
T |
|
| Q |
298 |
gttatcactg |
307 |
Q |
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|||||||||| |
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| T |
204783 |
gttatcactg |
204792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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