View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_low_33 (Length: 299)

Name: NF7960_low_33
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_low_33
NF7960_low_33
[»] chr4 (16 HSPs)
chr4 (109-281)||(43502568-43502740)
chr4 (18-108)||(51243762-51243852)
chr4 (18-110)||(43501774-43501866)
chr4 (18-102)||(52790374-52790458)
chr4 (18-109)||(36554485-36554576)
chr4 (22-110)||(36046104-36046192)
chr4 (21-102)||(54704650-54704731)
chr4 (25-92)||(35198548-35198615)
chr4 (21-110)||(54807986-54808075)
chr4 (24-107)||(33983820-33983903)
chr4 (21-92)||(47020968-47021039)
chr4 (21-110)||(52031692-52031781)
chr4 (18-92)||(45042160-45042234)
chr4 (19-89)||(778665-778735)
chr4 (25-92)||(37693622-37693689)
chr4 (23-99)||(1939339-1939415)
[»] chr7 (6 HSPs)
chr7 (13-110)||(40143879-40143976)
chr7 (13-110)||(4034152-4034249)
chr7 (25-99)||(37451030-37451104)
chr7 (18-92)||(39294862-39294936)
chr7 (21-110)||(3741402-3741491)
chr7 (18-92)||(33803861-33803935)
[»] chr3 (7 HSPs)
chr3 (23-110)||(41650883-41650970)
chr3 (18-107)||(49499714-49499803)
chr3 (18-101)||(2451865-2451942)
chr3 (21-77)||(49304045-49304102)
chr3 (21-77)||(23030605-23030660)
chr3 (25-64)||(49741243-49741282)
chr3 (13-48)||(52562779-52562814)
[»] chr8 (6 HSPs)
chr8 (17-110)||(15738747-15738840)
chr8 (20-110)||(35162644-35162734)
chr8 (21-92)||(42183522-42183594)
chr8 (26-92)||(4323380-4323446)
chr8 (21-92)||(1218645-1218716)
chr8 (33-87)||(5912383-5912437)
[»] chr6 (2 HSPs)
chr6 (20-110)||(11599906-11599996)
chr6 (63-107)||(30633486-30633530)
[»] chr5 (10 HSPs)
chr5 (18-102)||(34954867-34954951)
chr5 (20-101)||(18171157-18171238)
chr5 (18-99)||(7661228-7661309)
chr5 (36-99)||(18171224-18171287)
chr5 (18-89)||(40031758-40031829)
chr5 (54-110)||(1080941-1080997)
chr5 (36-99)||(7661297-7661359)
chr5 (21-99)||(20882961-20883039)
chr5 (18-48)||(25868567-25868597)
chr5 (15-64)||(10533794-10533843)
[»] chr2 (11 HSPs)
chr2 (18-110)||(6729604-6729696)
chr2 (20-110)||(35150556-35150646)
chr2 (25-110)||(1888920-1889005)
chr2 (13-102)||(34618975-34619064)
chr2 (18-107)||(21084666-21084755)
chr2 (21-107)||(40643327-40643412)
chr2 (18-102)||(41191391-41191474)
chr2 (18-64)||(37058102-37058148)
chr2 (13-64)||(5289821-5289872)
chr2 (53-107)||(33675565-33675619)
chr2 (21-97)||(19380195-19380271)
[»] chr1 (8 HSPs)
chr1 (17-110)||(7013803-7013896)
chr1 (13-110)||(43137628-43137725)
chr1 (18-99)||(10309503-10309584)
chr1 (29-110)||(33685617-33685698)
chr1 (20-92)||(29401281-29401353)
chr1 (36-102)||(15400033-15400099)
chr1 (21-64)||(30859491-30859534)
chr1 (26-75)||(45049450-45049500)
[»] scaffold0051 (1 HSPs)
scaffold0051 (21-110)||(21028-21117)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 109 - 281
Target Start/End: Original strand, 43502568 - 43502740
Alignment:
Q  109 accaaggaaagatagcaataaagtatgtccttgtgagcacagcacacctcacatattacttcatttcacatccacaatttgcttcaacgcgtgtggtagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43502568 accaaggaaagatagcaataaagtatgtccttgtgagcacagcacacctcacatattccttcatttcacatccacaatttgcttcaacgcgtgtggtagt 43502667  T
Q  209 actagtaagctctatatcactatatggcttctctggttaacactgatcaagtactagtaattggtagagaaag 281  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43502668 actagtaagctctgtatcactatatggcttctctggttaacactgatcaagtactagtaattggtagagaaag 43502740  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 51243852 - 51243762
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  51243852 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaaatggcgcaagtgtaaactagtgcga 51243762  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 43501774 - 43501866
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  43501774 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaagtagcgttgcgcatgttaagcggcgcaactgtaaactaatgcgaac 43501866  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 52790458 - 52790374
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaacta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52790458 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaagtagcgttgcgcatgttaagtggcgcaagtgtaaacta 52790374  T

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Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 36554576 - 36554485
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaa 109  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  36554576 ccctgcgctagttaactagcgtaagtgtaaacttatgcgcaaattaagtagcgttgcgcatgttaagtggcgcaagtgtaaactagtgcgaa 36554485  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 36046104 - 36046192
Alignment:
Q  22 gcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||||||| |||||||    
T  36046104 gcgctagttaactagcgcaagtgtaaacttgtgcgcaaattaagcagcgttgcgtatgttaagtggcgcaagtgtaaactagtgcgaac 36046192  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 54704731 - 54704650
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaacta 102  Q
    |||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||    
T  54704731 tgcgctagttaattagtgcaagtgtaaacttgtgcgcaaattaagtagcgttgcgcatgttaagtggcacaaatgtaaacta 54704650  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 35198548 - 35198615
Alignment:
Q  25 ctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  35198548 ctagttaactagcgcaagtgtaaacttgtatgcaagttaaatagcgttgcacatgttaagtggcgcaa 35198615  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 54807986 - 54808075
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||| | ||||||| |||||||||||||||| ||||||| || |||||||    
T  54807986 tgcgctagttaactagcacaagtgtaaatttgtgcgcatgttaagtggcgttgcacatgttaagtggcgcaggtgtaaattagtgcgaac 54808075  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 33983820 - 33983903
Alignment:
Q  24 gctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcg 107  Q
    |||||||||||||| |||||||||||| ||||||||||| | |||  ||||||| |||||||||||||||||||||||| ||||    
T  33983820 gctagttaactagcacaagtgtaaactagtgcgcaagtttagtagtcttgcgcacgttaagtggcgcaagtgtaaactagtgcg 33983903  T

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Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 47021039 - 47020968
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    ||||||||||||||||||||| || ||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  47021039 tgcgctagttaactagcgcaattgaaaactagtgtgcaagttaagtagcgttgcgcatgttaagtggcgcaa 47020968  T

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Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 52031692 - 52031781
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| || |||||||||| |||||||||   ||||||||||| |||||||    
T  52031692 tgcgttagttaactaacgcaagtgtaaacttgtgcacaagttaagtaacgttgcgcatattaagtggcaagagtgtaaactagtgcgaac 52031781  T

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Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 45042160 - 45042234
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    ||||||||||||||||||||||  ||||||||| ||| ||||||||| ||||||||| || ||||||||||||||    
T  45042160 ccctgcgctagttaactagcgcgtgtgtaaactagtgtgcaagttaagtagcgttgcacacgttaagtggcgcaa 45042234  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 778665 - 778735
Alignment:
Q  19 cctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcg 89  Q
    ||||| |||||| ||||||||||||||||| | ||| ||||||||| || ||||||||| |||||||||||    
T  778665 cctgcactagtttactagcgcaagtgtaaattagtgtgcaagttaagtaacgttgcgcacgttaagtggcg 778735  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 37693622 - 37693689
Alignment:
Q  25 ctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    ||||||||||||||||  ||| |||| ||||||| ||||| |||||| ||||| ||||||||||||||    
T  37693622 ctagttaactagcgcacatgttaactggtgcgcatgttaagtagcgtagcgcaagttaagtggcgcaa 37693689  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 1939415 - 1939339
Alignment:
Q  23 cgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaa 99  Q
    ||||||||||||| ||||||||||||    ||||| |||||| || || ||| || ||||||| |||||||||||||    
T  1939415 cgctagttaactaacgcaagtgtaaatgcatgcgctagttaactaacgctgcacaagttaagttgcgcaagtgtaaa 1939339  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 40143879 - 40143976
Alignment:
Q  13 aatatccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  40143879 aatatccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcacaagtgtaaactattgcgaac 40143976  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 4034152 - 4034249
Alignment:
Q  13 aatatccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||| |||| |||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  4034152 aatacccctacgctagttaactagtgtaagtgtaaacttgtgtgcaagttaagtagcgttgcgcatgttaagtggcgcaagtgtaaactagtgcgaac 4034249  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 37451104 - 37451030
Alignment:
Q  25 ctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaa 99  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37451104 ctagttaactagcgcaagtgtaaatttgtgcgcaagttaagtagcgttgcgcatgttaagtggcgcaagtgtaaa 37451030  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 39294936 - 39294862
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||| ||||||||||||||    
T  39294936 ccctgcgctagttaactagcgcacgtgtaaactagtgcgcaagttaagtaacgttgcgcacgttaagtggcgcaa 39294862  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 3741402 - 3741491
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| |||| |||| |||||||||||||| |||||| ||||| |||||||    
T  3741402 tgcgccagttaactagcgcaagtgcaaacttgtgcgtaagttaagtagctttgcacatgttaagtggcgtaagtgtgaactagtgcgaac 3741491  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 33803935 - 33803861
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    ||||||||||||||| ||||||||||| ||||| || |||||||||| || ||||||||| |||| |||||||||    
T  33803935 ccctgcgctagttaagtagcgcaagtggaaactagtacgcaagttaagtaacgttgcgcaagttatgtggcgcaa 33803861  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 41650970 - 41650883
Alignment:
Q  23 cgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  41650970 cgctagttaactagcgcaagtgtaaacttgtgcgcaagttaagtagcgttgcgcatgttaagtggcgcaagtgtaaactagtgcgaac 41650883  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 49499714 - 49499803
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcg 107  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||| |||||||||| ||||||||||||| ||||    
T  49499714 ccctgcgctagttaactagtgcaagtgtaaactagtgcgcaagttaagtagcattgcgcacgttaagtggcacaagtgtaaactagtgcg 49499803  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2451942 - 2451865
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaact 101  Q
    ||||||| ||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2451942 ccctgcgttagttaactagcgcaa------acttgtgcgcaagttaagtagcgttgcgcatgttaagtggcgcaagtgtaaact 2451865  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 49304102 - 49304045
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaa-cttgtgcgcaagttaaatagcgttgcgca 77  Q
    ||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||    
T  49304102 tgcgctagttaaccagcgcaagtgtaaacctagtgcgcaagttaagtagcgttgcgca 49304045  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 23030660 - 23030605
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgca 77  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  23030660 tgcgctaattaactagcacaagtg-aaacttgtgcgcaagttaagtagcgttgcgca 23030605  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 49741243 - 49741282
Alignment:
Q  25 ctagttaactagcgcaagtgtaaacttgtgcgcaagttaa 64  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  49741243 ctagttaactagcgcaagtgtaaatttgtgcgcatgttaa 49741282  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 52562814 - 52562779
Alignment:
Q  13 aatatccctgcgctagttaactagcgcaagtgtaaa 48  Q
    |||| |||||||||||||||||||||||||||||||    
T  52562814 aatacccctgcgctagttaactagcgcaagtgtaaa 52562779  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 15738747 - 15738840
Alignment:
Q  17 tccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15738747 tccctgcgctagttaactagcacaagtgtaaacttgtgcgtaaattaagtagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 15738840  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 35162734 - 35162644
Alignment:
Q  20 ctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||    
T  35162734 ctgcgctagttaaccagcgcaagtgtaaacttgtgcgcaagttaagtagcgttgcgcatgttaagtggcgtaagtgtaaactagtgcgaac 35162644  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 42183594 - 42183522
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaactt-gtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||    
T  42183594 tgcgctagttaactagcgcaagtgtaaacctagtgcgcaagttaactagcgttgcgcacgttaagtggcgcaa 42183522  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 4323446 - 4323380
Alignment:
Q  26 tagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  4323446 tagttaactagcgcaaatataaacttgtgcgcaagttaagtagcgttgcgcatgtcaagtggcgcaa 4323380  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 1218716 - 1218645
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    |||||||||||||||||||||||||||||| ||  ||||||||| |||| ||| ||| ||||||||||||||    
T  1218716 tgcgctagttaactagcgcaagtgtaaactagtatgcaagttaagtagctttgtgcacgttaagtggcgcaa 1218645  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 5912383 - 5912437
Alignment:
Q  33 ctagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtgg 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||| ||  |||||||||    
T  5912383 ctagcacaagtgtaaactagtgcgcaagttaagtagcgttgtgctagttaagtgg 5912437  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 11599996 - 11599906
Alignment:
Q  20 ctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  11599996 ctgcgctagttaactagcgtaagtgtaaacttgtgcgcaagttaagtagcgttgcgcatgttaagtggcgcaaatgtaaactagtgcgaac 11599906  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 30633486 - 30633530
Alignment:
Q  63 aaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcg 107  Q
    ||||||||||||||| ||||||||  |||||||||||||| ||||    
T  30633486 aaatagcgttgcgcacgttaagtgatgcaagtgtaaactagtgcg 30633530  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 34954951 - 34954867
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaacta 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34954951 ccctgcgctagttaactaccgcaagtgtaaacttgtgcgcaagttaaatagcgcggcgcatgttaagtggcgcaagtgtaaacta 34954867  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 18171157 - 18171238
Alignment:
Q  20 ctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaact 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||| |||||||    
T  18171157 ctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaggtagcgttgcacatgttaagtggcgcaagggtaaact 18171238  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 7661228 - 7661309
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaa 99  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| |||  |||||||||||||||||||||| ||||||    
T  7661228 ccctgcgctagttaactagcacaagtgtaaacttgggcgcaagttaactagtattgcgcatgttaagtggcgcaaatgtaaa 7661309  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 18171224 - 18171287
Alignment:
Q  36 gcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaa 99  Q
    ||||||| ||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||    
T  18171224 gcgcaagggtaaacttgtgtgtaagttaggtagcgttgcgcatgttaagtggcgcaagtgtaaa 18171287  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 40031758 - 40031829
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcg 89  Q
    ||||||||||||| |||||| |||||||||||| |||| |||||||| || ||||||||| |||||||||||    
T  40031758 ccctgcgctagtttactagcacaagtgtaaactagtgcacaagttaagtaacgttgcgcaagttaagtggcg 40031829  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 1080941 - 1080997
Alignment:
Q  54 gcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||    
T  1080941 gcgcaagttaagcagcgttgtgcatgttaagtggcgcaagtgtaaactagtgcgaac 1080997  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 7661297 - 7661359
Alignment:
Q  36 gcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaa 99  Q
    |||||| |||||| |||| |||||||||  ||||||||||||| ||||||||||||||||||||    
T  7661297 gcgcaaatgtaaatttgtacgcaagttaggtagcgttgcgcat-ttaagtggcgcaagtgtaaa 7661359  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 20882961 - 20883039
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaa 99  Q
    ||||||||||||||| |||||||| |||  | || |  |||||| |||||||||||| ||||||  |||||||||||||    
T  20882961 tgcgctagttaactaacgcaagtgaaaaactatgtgttagttaactagcgttgcgcaagttaagatgcgcaagtgtaaa 20883039  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 25868597 - 25868567
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaa 48  Q
    |||||||||||||||||||||||||||||||    
T  25868597 ccctgcgctagttaactagcgcaagtgtaaa 25868567  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 10533843 - 10533794
Alignment:
Q  15 tatccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaa 64  Q
    |||||||||| |||||||||| ||||||||||||  ||||||| ||||||    
T  10533843 tatccctgcgttagttaactaacgcaagtgtaaaaatgtgcgccagttaa 10533794  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 6729696 - 6729604
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  6729696 ccctgcgctagttaactatcgcaagtgtaaacttgtgtgcaagttaagtagcgtggcgcatgttaagtggcgcaagtgtaaactagtgcgaac 6729604  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 35150556 - 35150646
Alignment:
Q  20 ctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||    
T  35150556 ctgcgctagttaactagcgcaagtgtaaacttctgcgcaagttaagtagcgttgcgcatgttaagtggcacaattgtaaactagtgcgaac 35150646  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 1889005 - 1888920
Alignment:
Q  25 ctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | |||||||    
T  1889005 ctagttaattagcgcaagtgtaaacttgtgcgcaagttaaatagtgtagcgcatgttaagtggcgcaagtgtaaaccagtgcgaac 1888920  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 34618975 - 34619064
Alignment:
Q  13 aatatccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaacta 102  Q
    |||| |||| |||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  34618975 aatacccctacgctagttaattagtgcaagtgtaaacttatgcgcaagttaagtagcgttgcgcatgttaagtagcgcaagtgtaaacta 34619064  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 21084755 - 21084666
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcg 107  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||| | |||||||||| ||||| |||||||||||||||||| ||||    
T  21084755 ccctgcactacttaactagcgcaagtgtaaactagtgcgcaagttaagtggcgttgcgcacgttaaatggcgcaagtgtaaactagtgcg 21084666  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 40643412 - 40643327
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcg 107  Q
    ||||||||||||||||||||||||||||||  ||| |||||||| |||||| ||||| |||||||||||| ||||||||||| ||||    
T  40643412 tgcgctagttaactagcgcaagtgtaaactaatgcacaagttaactagcgtcgcgcacgttaagtggcgc-agtgtaaactagtgcg 40643327  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 41191391 - 41191474
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaacta 102  Q
    ||||| |||||||||||||||||||| ||| || |||||||| |||| ||||||||| ||||||||||||| |||||||||||||    
T  41191391 ccctgtgctagttaactagcgcaagtataacct-gtgcgcaaattaagtagcgttgcacatgttaagtggctcaagtgtaaacta 41191474  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 37058148 - 37058102
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaa 64  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||    
T  37058148 ccctgcgctaattaactagcgcaagtgtaaactagtgcgcacgttaa 37058102  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 5289821 - 5289872
Alignment:
Q  13 aatatccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaa 64  Q
    |||| ||||||| ||||||||||||||||||||||||| |||  ||||||||    
T  5289821 aatacccctgcgttagttaactagcgcaagtgtaaactagtggacaagttaa 5289872  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 33675619 - 33675565
Alignment:
Q  53 tgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcg 107  Q
    |||||||||||| |||||||| | | |||||||| ||||||||||||||| ||||    
T  33675619 tgcgcaagttaagtagcgttgtgtacgttaagtgacgcaagtgtaaactagtgcg 33675565  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 19380271 - 19380195
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgta 97  Q
    ||||||||||||||| ||||||||||||  | ||||  |||||| || || |||||| ||||||| |||||| ||||    
T  19380271 tgcgctagttaactaacgcaagtgtaaatgtatgcgttagttaactaacgctgcgcaagttaagttgcgcaaatgta 19380195  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 7013803 - 7013896
Alignment:
Q  17 tccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||  ||||| |||||||||||||||| |||||||||||||||||||||    
T  7013803 tccctgcgctagttaactagcgcacgtgtaaacttgtgcgcaacttaagcagcgtggcgcatgttaagtggcacaagtgtaaactaatgcgaac 7013896  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 43137628 - 43137725
Alignment:
Q  13 aatatccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||||||    
T  43137628 aatagccctgcgctagttaactagcgcaagtgtaaacttatgcgcaaattaagtagcgttgcacatgttaagtgacgcaagtgtaaactagtgcgaac 43137725  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 10309584 - 10309503
Alignment:
Q  18 ccctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaa 99  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  10309584 ccctgcgctagttaactagcgcacgtgtaaacttgcgcgcaagttaggtagcgttgcgcatgttaagtggcgcaagtgtaaa 10309503  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 33685617 - 33685698
Alignment:
Q  29 ttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  33685617 ttaactaacgcaagtgtaaacttatgcgcaagttaaatagcgttgcacatgttaagtggcgcaagtgtaaactagtgcgaac 33685698  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 29401353 - 29401281
Alignment:
Q  20 ctgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaa 92  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  29401353 ctgcgttagttaactagcacaagtgtaaacttgtgcgcaaattaaatagcattgcacatgttaagtggcgcaa 29401281  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 15400099 - 15400033
Alignment:
Q  36 gcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaacta 102  Q
    ||||||||||||||| ||||||||||||| ||||||||||||  ||||||  |||||||||||||||    
T  15400099 gcgcaagtgtaaactagtgcgcaagttaagtagcgttgcgcacattaagtaacgcaagtgtaaacta 15400033  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 30859534 - 30859491
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaa 64  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  30859534 tgcgctagttaactagcgcaagtgtaaactagtgcgcaagttaa 30859491  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 45049450 - 45049500
Alignment:
Q  26 tagttaactagcgcaagtgtaaa-cttgtgcgcaagttaaatagcgttgcg 75  Q
    ||||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  45049450 tagttaactagcgcaagtgtaaacctagtgcgcaagttaagtagcgttgcg 45049500  T

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Target: scaffold0051 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 21117 - 21028
Alignment:
Q  21 tgcgctagttaactagcgcaagtgtaaacttgtgcgcaagttaaatagcgttgcgcatgttaagtggcgcaagtgtaaactaatgcgaac 110  Q
    |||| |||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||| || |||||||    
T  21117 tgcgttagttaactagcacaattgtaaacttgtgcgcaagttaagtagcgttgcgcatgttaagtggttcaagtgtaaattagtgcgaac 21028  T

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