View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_34 (Length: 299)
Name: NF7960_low_34
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 5414976 - 5415264
Alignment:
| Q |
1 |
ttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5414976 |
ttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacaaaaa |
5415075 |
T |
|
| Q |
101 |
nntttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5415076 |
aatttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgcgggttgtgctgctgttattgtgaatcttaa |
5415175 |
T |
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| Q |
201 |
caatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatctctg |
289 |
Q |
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| T |
5415176 |
caatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctg |
5415264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 5388562 - 5388720
Alignment:
| Q |
131 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
230 |
Q |
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| T |
5388562 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5388661 |
T |
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| Q |
231 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatctctg |
289 |
Q |
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| T |
5388662 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctg |
5388720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 5402371 - 5402529
Alignment:
| Q |
131 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
230 |
Q |
| |
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|||||||||| ||||| || || ||| | |||||||||| || |||||||||||| | ||||||||| ||||||| | |||||||||| |||||| || |
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| T |
5402371 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5402470 |
T |
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| Q |
231 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatctctg |
289 |
Q |
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| T |
5402471 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctg |
5402529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 5396660 - 5396800
Alignment:
| Q |
120 |
ttgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaaca |
219 |
Q |
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||||| |||| |||||||||||||||||||||||| | | ||||||||||||| ||||||||||| | ||||| |||||||||||| | || || ||| |
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| T |
5396660 |
ttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaatgataaagttgtgaca |
5396759 |
T |
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| Q |
220 |
cttcctggaattgcatttgcttggggattcactgttatggt |
260 |
Q |
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| T |
5396760 |
cttcctggaatatcaattgtttggggacttgctgttatggt |
5396800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 5408112 - 5407992
Alignment:
| Q |
126 |
atagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcct |
225 |
Q |
| |
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|||| ||||||||||||||||| |||||| | | ||||||||||||| |||| | |||| | ||||| |||||||||||| | || || ||||||||| |
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| T |
5408112 |
atagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtggttctgtggtggtgaaccttaacaatgataaagttgtgacacttcct |
5408013 |
T |
|
| Q |
226 |
ggaattgcatttgcttgggga |
246 |
Q |
| |
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||||||||| ||| ||||||| |
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| T |
5408012 |
ggaattgcaattgtttgggga |
5407992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 5398750 - 5398798
Alignment:
| Q |
198 |
taacaatgatcatgtagtaacacttcctggaattgcatttgcttgggga |
246 |
Q |
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||||||||||| |||||| ||||||| ||||||||||||| | |||||| |
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| T |
5398750 |
taacaatgatcgtgtagtgacacttcttggaattgcatttacatgggga |
5398798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 36267625 - 36267715
Alignment:
| Q |
199 |
aacaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatctctg |
289 |
Q |
| |
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|||||||| |||| |||||||||||||||||| || ||| ||||||| | |||| ||||| || |||||||| ||||||||||||||| |
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| T |
36267625 |
aacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctg |
36267715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 36262476 - 36262554
Alignment:
| Q |
211 |
gtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatctctg |
289 |
Q |
| |
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|||||||||||||| || |||||| ||| ||||||| | ||| | |||| |||||||||||| ||||||| ||||||| |
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| T |
36262476 |
gtagtaacacttccagggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctg |
36262554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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