View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_35 (Length: 296)
Name: NF7960_low_35
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 23258522 - 23258634
Alignment:
| Q |
173 |
cacttggctcaaaatgaacaaggttattaaaatatcctctttctattttattttattt--taaggcatgttatcaaaatatctattgctgcgtcactata |
270 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
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| T |
23258522 |
cacttggctcaaaatgaacaaggttatcaaaatatcctctttctattttattttattttataaggcatgttatgaaaatatcta-cgctgcgtcactata |
23258620 |
T |
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| Q |
271 |
caaggttattatat |
284 |
Q |
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|||||||||||||| |
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| T |
23258621 |
caaggttattatat |
23258634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23258353 - 23258399
Alignment:
| Q |
1 |
agttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
47 |
Q |
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| T |
23258353 |
agttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
23258399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 23258418 - 23258461
Alignment:
| Q |
68 |
agtgagctatttcccaagttggaggctttgtgattggttatcaa |
111 |
Q |
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| T |
23258418 |
agtgagctatttcccaagttggaggctgtgtgattggttatcaa |
23258461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 23266934 - 23266974
Alignment:
| Q |
71 |
gagctatttcccaagttggaggctttgtgattggttatcaa |
111 |
Q |
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| T |
23266934 |
gagctatttcctaagttggaggctttgtgattggttatcaa |
23266974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23266874 - 23266911
Alignment:
| Q |
8 |
tttgaaggaaagaataaggtaacaggtagagtatttgt |
45 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| |
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| T |
23266874 |
tttgaaggaaagaataaggtaacaggcagagtgtttgt |
23266911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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