View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_38 (Length: 282)
Name: NF7960_low_38
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 46833093 - 46832836
Alignment:
| Q |
8 |
cgtgttgagattttatttggataagttatttggattctttgcctataatttttattcttatactccatgagaaatggctaggctattctttctttgctac |
107 |
Q |
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| T |
46833093 |
cgtgttgagattttatttggataaattatttggattttttgcctataatttttattcttatactccatgagaaatggcatggctattctttctttgctaa |
46832994 |
T |
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| Q |
108 |
ttactaatcactactaatttagttattactaatgttcatgctatatccatttgttttgccaattcagtgactttctatgtgtaaaagtaattgcctatga |
207 |
Q |
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| T |
46832993 |
ttactaatcactactaatttagttattactaatgttcatgctatatccatttgttttgccaattcagtgactttctatgtgtaaaagtaattgcctatga |
46832894 |
T |
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| Q |
208 |
ggtagataccactagctaaaactaaattggcaacatttattaagacaacagtaaggtt |
265 |
Q |
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| T |
46832893 |
ggtagatactactagctaaaactaaactgacaacatttattaagacaacagtaaggtt |
46832836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 10355778 - 10355724
Alignment:
| Q |
62 |
ttcttatactccatgagaaatggctaggctattctttctttgctacttactaatc |
116 |
Q |
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| T |
10355778 |
ttcttatactccatgagaaatggctaggctattctttctttgtgaattactaatc |
10355724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 22008734 - 22008775
Alignment:
| Q |
62 |
ttcttatactccatgagaaatggctaggctattctttctttg |
103 |
Q |
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| T |
22008734 |
ttcttatactccatgagaaatggctaggctattctttctttg |
22008775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 22964812 - 22964768
Alignment:
| Q |
40 |
gattctttgcctataatttttattcttatactccatgagaaatgg |
84 |
Q |
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| T |
22964812 |
gattctttgcctataatttttattcttatactccatgaaaaatgg |
22964768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 22996754 - 22996798
Alignment:
| Q |
40 |
gattctttgcctataatttttattcttatactccatgagaaatgg |
84 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
22996754 |
gattatttgcctataatttttattcttatactccgtgagaaatgg |
22996798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 924083 - 924126
Alignment:
| Q |
41 |
attctttgcctataatttttattcttatactccatgagaaatgg |
84 |
Q |
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| T |
924083 |
attctttgcctatgatttttattcttattctccatgagaaatgg |
924126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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