View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_low_4 (Length: 598)

Name: NF7960_low_4
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_low_4
NF7960_low_4
[»] chr7 (1 HSPs)
chr7 (65-131)||(44953314-44953380)
[»] chr2 (1 HSPs)
chr2 (65-118)||(34332326-34332379)
[»] chr5 (2 HSPs)
chr5 (387-446)||(20670348-20670407)
chr5 (513-542)||(20670270-20670299)
[»] chr4 (1 HSPs)
chr4 (67-118)||(38620694-38620744)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 44953314 - 44953380
Alignment:
Q  65 taaaattacaaaaatagccatgccacatggagggtgtacattggggtgtacatgtatctttttccta 131  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44953314 taaaattacaaaaataatcatgccacatggagggtgtacattggggtgtacatgtatctttttccta 44953380  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 34332326 - 34332379
Alignment:
Q  65 taaaattacaaaaatagccatgccacatggagggtgtacattggggtgtacatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34332326 taaaattacaaaaatagccatgccacatggagggtgtacattggggtgtacatg 34332379  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 20670407 - 20670348
Alignment:
Q  387 gagaatgcaattgcaaattgtactcattcatcactttcaatgcaatttatcctttttaca 446  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  20670407 gagaaggcaattgcaaattgaactcattcatcattttcaatgcaatttatcctttttaca 20670348  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 542
Target Start/End: Complemental strand, 20670299 - 20670270
Alignment:
Q  513 atgcaagatgattcaatgatcatggttcaa 542  Q
    ||||||||||||||||||||||||||||||    
T  20670299 atgcaagatgattcaatgatcatggttcaa 20670270  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 38620744 - 38620694
Alignment:
Q  67 aaattacaaaaatagccatgccacatggagggtgtacattggggtgtacatg 118  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||    
T  38620744 aaattaccaaaatagccttgccacatg-agggtgtacattggggtgtacatg 38620694  T

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