View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_40 (Length: 259)
Name: NF7960_low_40
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 10783999 - 10784228
Alignment:
| Q |
14 |
tcgtgttatacgacccgtggagttagacatggaatcttgtttagttaaatcctctcttctcatttctggatgaaactcatttaccaagcttaagcccggg |
113 |
Q |
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| T |
10783999 |
tcgtgttatacgacccgtggagttagacatggaatcttttttagttaagtcctctcttctcatttctggatgaaactcatttaccaagcttaagtcctgg |
10784098 |
T |
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| Q |
114 |
atatattgctcctcctatagtaaattgtgatcattgtcagaactatcaaatattaaaggaaaatgctatgaggtacgataaagcaaacgac----ctagg |
209 |
Q |
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| T |
10784099 |
atatgttgctcctcctgtagtaaattgtgatcattgtcagaactatcaaatattaaaggaaaatgctatgaggtatgataaagcaaacgacctagctagg |
10784198 |
T |
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| Q |
210 |
cacaatctcttggtttttctacctagccttt |
240 |
Q |
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| T |
10784199 |
cacaatctcttgcttttt-tacctagccttt |
10784228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 50507383 - 50507260
Alignment:
| Q |
120 |
tgctcctcctatagtaaattgtgatcattgtcagaactatcaaatattaaaggaaaatgctatgaggtacgat------aaagcaaacgacctaggcaca |
213 |
Q |
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| T |
50507383 |
tgctcttcctatagtaaattgtgatcattgtcagaactatcaaatattaaaggaaaatgctacgaggtacgataaaaaaaaagcaaacgacctaggcaca |
50507284 |
T |
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| Q |
214 |
atctcttggtttttctacctagcct |
238 |
Q |
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| T |
50507283 |
atctcttgctttttc-acctagcct |
50507260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 50507459 - 50507394
Alignment:
| Q |
14 |
tcgtgttatacgacccgtggagttagacatggaatcttgtttagttaaatcctctcttctcatttc |
79 |
Q |
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| T |
50507459 |
tcgtgttatacgacccgtggagttagacatggaagccttttgtgttaagtcctctcttctcgtttc |
50507394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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