View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_low_41 (Length: 258)

Name: NF7960_low_41
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_low_41
NF7960_low_41
[»] chr6 (4 HSPs)
chr6 (55-242)||(3802016-3802203)
chr6 (103-211)||(3802750-3802858)
chr6 (103-152)||(1528561-1528610)
chr6 (9-38)||(3801970-3801999)
[»] chr8 (5 HSPs)
chr8 (96-211)||(5873157-5873273)
chr8 (103-155)||(5875177-5875229)
chr8 (132-196)||(42345423-42345487)
chr8 (103-157)||(39656908-39656962)
chr8 (132-196)||(7054119-7054183)
[»] chr5 (6 HSPs)
chr5 (102-152)||(1282253-1282303)
chr5 (103-194)||(1282924-1283015)
chr5 (103-171)||(39949492-39949560)
chr5 (103-140)||(42310849-42310886)
chr5 (132-196)||(1970470-1970533)
chr5 (132-196)||(9924079-9924143)
[»] chr1 (8 HSPs)
chr1 (104-194)||(4124701-4124791)
chr1 (99-152)||(4125416-4125469)
chr1 (103-155)||(51977194-51977246)
chr1 (103-152)||(49959954-49960003)
chr1 (103-152)||(51129373-51129422)
chr1 (103-149)||(3788435-3788481)
chr1 (103-153)||(15374695-15374745)
chr1 (103-196)||(51610176-51610269)
[»] chr7 (8 HSPs)
chr7 (111-172)||(34996885-34996946)
chr7 (103-152)||(41712965-41713014)
chr7 (101-157)||(3820392-3820448)
chr7 (101-153)||(9379793-9379845)
chr7 (103-153)||(9378729-9378779)
chr7 (102-151)||(25530377-25530424)
chr7 (102-204)||(34368162-34368264)
chr7 (103-171)||(34367362-34367429)
[»] chr4 (9 HSPs)
chr4 (103-155)||(35428155-35428207)
chr4 (102-204)||(17978262-17978364)
chr4 (102-171)||(17979094-17979163)
chr4 (132-196)||(23425162-23425226)
chr4 (103-140)||(5825334-5825371)
chr4 (102-151)||(24471829-24471878)
chr4 (139-211)||(34372219-34372291)
chr4 (103-151)||(38320420-38320468)
chr4 (132-196)||(39429254-39429318)
[»] chr3 (8 HSPs)
chr3 (101-152)||(1128225-1128276)
chr3 (104-153)||(51492455-51492504)
chr3 (132-196)||(43768055-43768118)
chr3 (103-153)||(42147546-42147596)
chr3 (103-149)||(50306525-50306571)
chr3 (102-151)||(23379331-23379380)
chr3 (137-194)||(37104386-37104443)
chr3 (103-151)||(7359842-7359890)
[»] chr2 (8 HSPs)
chr2 (102-204)||(2992001-2992103)
chr2 (102-171)||(2992835-2992904)
chr2 (102-143)||(5504343-5504384)
chr2 (100-140)||(42946480-42946520)
chr2 (133-211)||(2650259-2650337)
chr2 (103-149)||(26021913-26021959)
chr2 (100-157)||(17947930-17947987)
chr2 (103-151)||(5505220-5505268)
[»] scaffold0016 (1 HSPs)
scaffold0016 (103-153)||(67247-67297)
[»] scaffold0318 (1 HSPs)
scaffold0318 (132-196)||(3810-3874)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 3802016 - 3802203
Alignment:
Q  55 ctgagtaaagctagaatcccatttactcatcacatgacttaacttcatggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  3802016 ctgagtaaagctagaatcccatttactcatcacatgacttaacttcaaggtggcatttagggtgggaacgggaaagagtttcacactatggaaaagttgt 3802115  T
Q  155 tttacatcattagattaagaaggaacattaattttatcatggtctttctacactatannnnnnncctttctctttcacattttctttg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  3802116 tttacatcattagattaagaaggaacattaattttatcatggtctttctacactatatttttttcctttctctttcacattttctttg 3802203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 3802858 - 3802750
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatggtctttc 202  Q
    |||||||||||||||||||| | |||||| |||| |||||||||||| || ||||| | ||||| ||||  |||||||| | ||||||||||||||||||    
T  3802858 ggtggcatttagggtgggaatgggaaagaatttctcactatgggaaacttattttataccattaaattagaaaggaacactgattttatcatggtctttc 3802759  T
Q  203 tacactata 211  Q
     ||||||||    
T  3802758 cacactata 3802750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 1528561 - 1528610
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagtt 152  Q
    ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  1528561 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagtt 1528610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 3801970 - 3801999
Alignment:
Q  9 gaagaatatacttaaataatattgtaaagg 38  Q
    ||||||||||||||||||||||||||||||    
T  3801970 gaagaatatacttaaataatattgtaaagg 3801999  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 5873157 - 5873273
Alignment:
Q  96 acttcatggtggcattt-agggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcat 194  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||  || |  | ||||||||||| ||||||||   ||||||| ||    
T  5873157 acttcatggtggcattttagggtgggaatgagaaagagtttccaactatgggaaagtatttcttgaccattagattaaaaaggaacacatattttatgat 5873256  T
Q  195 ggtctttctacactata 211  Q
    ||||| || ||||||||    
T  5873257 ggtctgtccacactata 5873273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 5875229 - 5875177
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgtt 155  Q
    |||||||||||||||||||| | | |||||||| |||||||||||||||||||    
T  5875229 ggtggcatttagggtgggaatggggaagagttttccactatgggaaagttgtt 5875177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 42345423 - 42345487
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    ||||||||| ||||||||||| ||||  | |||||||||||| ||||  ||||||||||||||||    
T  42345423 gtttcccaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttatcatgg 42345487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 39656962 - 39656908
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgtttt 157  Q
    |||||||||||||||||| | | |||||||||||| ||||| |||||||| ||||    
T  39656962 ggtggcatttagggtgggtaggggaaagagtttcctactataggaaagttttttt 39656908  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 7054119 - 7054183
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    ||||||||| |||| |||||| ||||  | |||||||||||| ||||  ||||||||||||||||    
T  7054119 gtttcccaccatggaaaagtttttttcaaccattagattaaggaggagtattaattttatcatgg 7054183  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 1282253 - 1282303
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagtt 152  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  1282253 tggtggcatttagggtgggaatgggaaagagtttcccactatgggaaagtt 1282303  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 1283015 - 1282924
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcat 194  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||| |||   | |||||||||||  ||||  ||| ||||||||||    
T  1283015 ggtgacatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaatgaggagtattgattttatcat 1282924  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 39949492 - 39949560
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagatta 171  Q
    ||||||||||||||||||   | |||||||||| ||||||||| |||||| ||||| | ||||||||||    
T  39949492 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagatta 39949560  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 42310849 - 42310886
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccac 140  Q
    |||||||||||||||||||| | |||||||||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccac 42310886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 1970533 - 1970470
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    ||||||||| ||||||||||| ||| | | |||||||||||||| ||  ||||||||||||||||    
T  1970533 gtttcccaccatgggaaagttttttca-accattagattaagaatgagtattaattttatcatgg 1970470  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 9924143 - 9924079
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    ||||||||| ||||||||||| ||||  | ||||| |||||| ||||  ||||||||||||||||    
T  9924143 gtttcccaccatgggaaagtttttttcaaccattaaattaaggaggagtattaattttatcatgg 9924079  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 4124701 - 4124791
Alignment:
Q  104 gtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcat 194  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| |||   | |||||||||||  ||||  ||| ||||||||||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaatgaggagtattgattttatcat 4124791  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 4125469 - 4125416
Alignment:
Q  99 tcatggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagtt 152  Q
    |||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  4125469 tcatggtggcatttagggtgggaatgggaaagagtttcccactataggaaagtt 4125416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 51977246 - 51977194
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgtt 155  Q
    ||||||||||||||||| || | |||||||||| |||||||||||||||||||    
T  51977246 ggtggcatttagggtggaaatgggaaagagttttccactatgggaaagttgtt 51977194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 49959954 - 49960003
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagtt 152  Q
    ||||||||||||||||| || |||||||||||||| ||||| ||||||||    
T  49959954 ggtggcatttagggtggaaatgagaaagagtttcctactataggaaagtt 49960003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 51129373 - 51129422
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagtt 152  Q
    ||||||||||||||||||   | |||||||||||||||||||||||||||    
T  51129373 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagtt 51129422  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 3788435 - 3788481
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaa 149  Q
    |||||||||||||||||||| | ||||||||||||||| || |||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 15374745 - 15374695
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttg 153  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| ||||||    
T  15374745 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 15374695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 51610269 - 51610176
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    |||||||||||||||||| | ||| || | |||||||| ||||||||||| ||||| | || |||||||   ||||| | | ||||||||||||    
T  51610269 ggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtttttttataccactagattagagaggaatactgattttatcatgg 51610176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 34996885 - 34996946
Alignment:
Q  111 ttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaa 172  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||||  |||||||||||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagtgatttttgatcattagattaa 34996946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 41712965 - 41713014
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagtt 152  Q
    ||||||||||||||||||   ||||||||||||| |||||||||||||||    
T  41712965 ggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagtt 41713014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 3820392 - 3820448
Alignment:
Q  101 atggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgtttt 157  Q
    |||||||||||||||||||| | | |||||||||||| ||||| |||||||| ||||    
T  3820392 atggtggcatttagggtgggtaggtgaaagagtttcctactataggaaagttttttt 3820448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 9379845 - 9379793
Alignment:
Q  101 atggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttg 153  Q
    |||||||||||||||||||||  | |||||| ||| |||||||||||||||||    
T  9379845 atggtggcatttagggtgggatggggaaagatttttccactatgggaaagttg 9379793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 9378729 - 9378779
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttg 153  Q
    |||||||||||||||||||| | |||||| ||| |||| ||||||||||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttg 9378779  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 25530424 - 25530377
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagt 151  Q
    ||||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  25530424 tggtggcatttagggtgggaatggga--gagtttcccactatgggaaagt 25530377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 34368264 - 34368162
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatggtcttt 201  Q
    |||||||||||||||||||   | |||||||||| |||  ||||||||||| ||||    |||||||||||  |||   ||||||||||||||||||| |    
T  34368264 tggtggcatttagggtgggcgggggaaagagttttccaacatgggaaagttatttttagccattagattaaagaggtgtattaattttatcatggtctat 34368165  T
Q  202 cta 204  Q
    |||    
T  34368164 cta 34368162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 34367362 - 34367429
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagatta 171  Q
    ||||||||||||||||||   | |||||||||| ||||||||| |||||| ||||| | ||||||||||    
T  34367362 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtt-ttttataccattagatta 34367429  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 35428207 - 35428155
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgtt 155  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  35428207 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgtt 35428155  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 17978262 - 17978364
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatggtcttt 201  Q
    |||||||||||||||||||   | ||||||||||||||  ||||||||||| ||||    |||||||||||  |||   ||||||||||||||||||| |    
T  17978262 tggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaagaggtgtattaattttatcatggtctat 17978361  T
Q  202 cta 204  Q
    |||    
T  17978362 cta 17978364  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 17979163 - 17979094
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagatta 171  Q
    |||||||||||||||||||   | |||||||||| ||||||||| |||||| ||||| | ||||||||||    
T  17979163 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagatta 17979094  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 23425226 - 23425162
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    ||||||||| ||||||||||| ||||  | |||||||||||||| ||  ||||||||||||||||    
T  23425226 gtttcccaccatgggaaagtttttttcaaccattagattaagaatgagtattaattttatcatgg 23425162  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 5825334 - 5825371
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccac 140  Q
    |||||||||||||||||||| | |||||||||||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccac 5825371  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 24471829 - 24471878
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagt 151  Q
    ||||||||||||||||||||| |  |||||||||||||| || |||||||    
T  24471829 tggtggcatttagggtgggaatggaaaagagtttcccaccataggaaagt 24471878  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 34372291 - 34372219
Alignment:
Q  139 actatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatggtctttctacactata 211  Q
    |||||||||||||| ||||    |||||||||||  ||||  |||||||||||||||| || |||||||||||    
T  34372291 actatgggaaagttttttttgtccattagattaaagaggagtattaattttatcatggactgtctacactata 34372219  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 38320420 - 38320468
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagt 151  Q
    ||||||||||||||||||||   ||||||||||||||| | ||||||||    
T  38320420 ggtggcatttagggtgggaagaggaaagagtttcccaccacgggaaagt 38320468  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 39429254 - 39429318
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    |||||| || ||||||||||| ||||  | |||||||||||| ||||  ||||||||||||||||    
T  39429254 gtttcctaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttatcatgg 39429318  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 1128276 - 1128225
Alignment:
Q  101 atggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagtt 152  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||||||||    
T  1128276 atggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagtt 1128225  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 51492504 - 51492455
Alignment:
Q  104 gtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttg 153  Q
    ||||||||||||||||||  |||||||| |||||||| ||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagttg 51492455  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 43768055 - 43768118
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    ||||||||| ||||||||||| ||||| | |||||||||||||| ||  ||||||||||||||||    
T  43768055 gtttcccaccatgggaaagttttttta-accattagattaagaatgagtattaattttatcatgg 43768118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 42147596 - 42147546
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttg 153  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| ||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 42147546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 50306571 - 50306525
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaa 149  Q
    |||||||||||||||||||| | ||||||||||||||| || |||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 23379331 - 23379380
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagt 151  Q
    ||||||||||||||||||| | | |||||| ||||||||||| |||||||    
T  23379331 tggtggcatttagggtgggtaagggaaagattttcccactataggaaagt 23379380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 37104386 - 37104443
Alignment:
Q  137 ccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcat 194  Q
    |||| ||||||||||| ||||| | ||||||||||| | |||||||| ||||||||||    
T  37104386 ccaccatgggaaagtttttttaaaccattagattaaaagggaacattgattttatcat 37104443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 7359890 - 7359842
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagt 151  Q
    |||||||||||||||||| | ||| |||| |||||||| ||||||||||    
T  7359890 ggtggcatttagggtgggtaagaggaagactttcccaccatgggaaagt 7359842  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 2992001 - 2992103
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatggtcttt 201  Q
    |||||||||||||||||||   | ||||||||||||||  ||||||||||| ||||    |||||||||||  |||   ||||||||||||||||||| |    
T  2992001 tggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaagaggtgtattaattttatcatggtctat 2992100  T
Q  202 cta 204  Q
    |||    
T  2992101 cta 2992103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 2992904 - 2992835
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgttttacatcattagatta 171  Q
    |||||||||||||||||||   | |||||||||| ||||||||| |||||| ||||| | ||||||||||    
T  2992904 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagatta 2992835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 5504343 - 5504384
Alignment:
Q  102 tggtggcatttagggtgggaacgagaaagagtttcccactat 143  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  5504343 tggtggcatttagggtgggaaggggaaagagtttcccactat 5504384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 42946520 - 42946480
Alignment:
Q  100 catggtggcatttagggtgggaacgagaaagagtttcccac 140  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42946520 catggtggcatttagggtgggaatgggaaagagtttcccac 42946480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 2650259 - 2650337
Alignment:
Q  133 tttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatggtctttctacactata 211  Q
    |||||||  |||| |||||| ||||| | ||||||||||| | ||||||||||||||||||| | || || ||||||||    
T  2650259 tttcccatcatggaaaagtttttttaaaccattagattaaaagggaacattaattttatcataggctatccacactata 2650337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaa 149  Q
    |||||||||||||||||||| | ||||||||||||||| || |||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 17947987 - 17947930
Alignment:
Q  100 catggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttgtttt 157  Q
    |||||||||||||||| ||||   | |||||||||||||||||||||| |||| ||||    
T  17947987 catggtggcatttaggatgggtgagggaaagagtttcccactatgggagagttttttt 17947930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 5505268 - 5505220
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagt 151  Q
    ||||||||||||||||||||   |||||||||| |||| ||||||||||    
T  5505268 ggtggcatttagggtgggaagaggaaagagttttccaccatgggaaagt 5505220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 67247 - 67297
Alignment:
Q  103 ggtggcatttagggtgggaacgagaaagagtttcccactatgggaaagttg 153  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| ||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 67297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 3874 - 3810
Alignment:
Q  132 gtttcccactatgggaaagttgttttacatcattagattaagaaggaacattaattttatcatgg 196  Q
    |||| |||| ||||||||||| ||||  | ||||||||||| |||||  ||||||||||||||||    
T  3874 gttttccacaatgggaaagtttttttcaaccattagattaaaaaggagtattaattttatcatgg 3810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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