View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_42 (Length: 254)
Name: NF7960_low_42
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 32433301 - 32433516
Alignment:
| Q |
8 |
ttggtgttgttggacacattataccttggaatttcccaactatcatgttctttgctaaggctgctccttgtttggctgctggttgtactatggttcttaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32433301 |
ttggtgttgttggacacattataccttggaatttcccaactattatgttctttgctaaggctgctccttgtttggctgctggttgtactatggttcttaa |
32433400 |
T |
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| Q |
108 |
gcctgctgagcaaacaccactctcgtcgcnnnnnnnngctcatcttgctaaggaggtaaggttaaagaaaatttattgagttggttttgaaacattgttg |
207 |
Q |
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|||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
32433401 |
gcctgctgagcaaacacctctctcatcacttttttttgctcatcttgctaaggaggtaaggttaaagaaaatttgtttagttggttttgaaagattgttt |
32433500 |
T |
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| Q |
208 |
atagttccttaattca |
223 |
Q |
| |
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|||||||||||||||| |
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| T |
32433501 |
atagttccttaattca |
32433516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 32408520 - 32408357
Alignment:
| Q |
10 |
ggtgttgttggacacattataccttggaatttcccaactatcatgttctttgctaaggctgctccttgtttggctgctggttgtactatggttcttaagc |
109 |
Q |
| |
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||||| |||||||||||||| ||||||||||| || | || ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
32408520 |
ggtgtcgttggacacattattccttggaattttcctagtactatgtttgctgctaaggttgctcctgctttggctgctggttgtactatggttcttaagc |
32408421 |
T |
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| Q |
110 |
ctgctgagcaaacaccactctcgtcgcnnnnnnnngctcatcttgctaaggaggtaaggttaaa |
173 |
Q |
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||||||| |||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
32408420 |
ctgctgaacaaacacctctctctgctttgttttatgctcatcttgctaaggaggtaaggttaaa |
32408357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 43619164 - 43619281
Alignment:
| Q |
8 |
ttggtgttgttggacacattataccttggaatttcccaactatcatgttctttgctaaggctgctccttgtttggctgctggttgtactatggttcttaa |
107 |
Q |
| |
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|||||||||||||||||||||| |||||||| || || ||| | ||||||||| |||| | ||||| || |||||||| || || ||||| | || |
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| T |
43619164 |
ttggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgcttagctgctgggtgcaccatggtcgtcaa |
43619263 |
T |
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| Q |
108 |
gcctgctgagcaaacacc |
125 |
Q |
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||||||||||||||||| |
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| T |
43619264 |
acctgctgagcaaacacc |
43619281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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