View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_44 (Length: 239)
Name: NF7960_low_44
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38271763 - 38271985
Alignment:
| Q |
1 |
ttctttttagactagagttcaccggcattatgaggattcatgtaattggttttattttattcaatacaaatgattttgatgatgtttgagacaaatttca |
100 |
Q |
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| T |
38271763 |
ttctttttagactagagttcaccggcattataaggattcatgtaattggttttattttattcaatacaaatgattttgatgatgtttgagacaaatttca |
38271862 |
T |
|
| Q |
101 |
tgacagaaagtgactcctatatcatgttggatttagtaaagtcccagatccaacacaatagaacaaaacattatgtttatatttgtctcaaatgtcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38271863 |
tgacagaaagtgactcctatatcatgttggatttagtaaagtcccacatccaacacaatagaacaaaacattatgtttatatttgtctcaaatgtcattt |
38271962 |
T |
|
| Q |
201 |
gtaaatgggagaagagtgtaagg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38271963 |
gtaaatgggagaagagtgtaagg |
38271985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 38270557 - 38270684
Alignment:
| Q |
70 |
atgattttgatgatgtttgagacaaatttcatgacagaaagtgactcctatatcatgttggatttagtaaagtcccagatccaacacaatagaacaaaac |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||| |
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| T |
38270557 |
atgattttgatgatgtttgagacaaatttcatgacagaaagtgactactatatcatgttggatttagtaaagtcccacttcgaacacaatacaacaaaac |
38270656 |
T |
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| Q |
170 |
attatgtttatatttgtctcaaatgtca |
197 |
Q |
| |
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| T |
38270657 |
atcatgtttatatttgtctcaaatgtca |
38270684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 38273488 - 38273612
Alignment:
| Q |
43 |
taattggttttattttattcaatacaaatgattttgatgatgtttgagacaaatttcatgacagaaagtgactcctatatcatgttggatttagtaaagt |
142 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||| ||||| |
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| T |
38273488 |
taattggtttcattttattcaatacaaatgattttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgttcgatttaggaaagt |
38273587 |
T |
|
| Q |
143 |
cccagatccaacacaatagaacaaa |
167 |
Q |
| |
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| | ||| ||||| ||| |||||| |
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| T |
38273588 |
tctacatcgaacaccatacaacaaa |
38273612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 38279481 - 38279605
Alignment:
| Q |
73 |
attttgatgatgtttgagacaaatttcatgacagaaagtgactcct--atatcatgttggatttagtaaagtcccagatccaacacaatagaacaaaaca |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| |||| | ||| |||| ||| |||||||| ||||||||| |
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| T |
38279481 |
attttgatgatgtttgagacaaatttcatgacagaaagtaattactgcatatcatgttggttttatttaaggcccacatcggacacaatacaacaaaaca |
38279580 |
T |
|
| Q |
171 |
ttatgtttatatttgtctcaaatgt |
195 |
Q |
| |
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||||||||||||| |||| |||||| |
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| T |
38279581 |
ttatgtttatattagtctgaaatgt |
38279605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 38278017 - 38278175
Alignment:
| Q |
43 |
taattggttttattttattcaata--caaatgattttgatgatgtttgagacaaatttcatgacagaaagtgactcc--tatatcatgttggatttagta |
138 |
Q |
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||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||| ||| | ||||||||||| |||||| || |
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| T |
38278017 |
taatttgtttcattttattcaatatacaaatgattttgatgacgtttgagacaaatttcatgtctgaaagtaactactatatatcatgttcgatttatta |
38278116 |
T |
|
| Q |
139 |
aagtcccagatccaacacaatagaacaaaacattatgtttatatttgtctcaaatgtca |
197 |
Q |
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||||| || ||| | ||||||| |||| | |||||| |||||| |||||||| |||||| |
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| T |
38278117 |
aagtctcacatcgatcacaatacaacatatcattatatttataattgtctcatatgtca |
38278175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 10593196 - 10593015
Alignment:
| Q |
6 |
tttagactagagttcaccggcattatgaggattcatgtaattggttttattttattcaatacaaatga-ttttgatgatgtttgagacaaatttcatgac |
104 |
Q |
| |
|
||||||||||| | ||| | |||| | |||||| | ||||| ||| |||||||| ||||||||||| |||||||||| |||||||| ||||||||||| |
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| T |
10593196 |
tttagactagaatacacggacattgtagggattcgtataattaatttcattttattgaatacaaatgatttttgatgatatttgagactaatttcatgac |
10593097 |
T |
|
| Q |
105 |
agaaagtgactcctatatcatgttggatttagtaaagtcccagatccaacacaatagaacaaaacattatgtttatatttgt |
186 |
Q |
| |
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| T |
10593096 |
aaaaagttaccattatatcatgttggatttactaatgttccacatcagacacaatacaatataacactatgtttataattgt |
10593015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 26572749 - 26572868
Alignment:
| Q |
68 |
aaatgattttgatgatgtttgagacaaatttcatgacagaaagtgactcct-atatcatgttggatttagtaaagtcccagatccaacacaatagaacaa |
166 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||||||| ||| || | |||||||| | |||| |||||| ||| ||| || |||||| |||| |
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| T |
26572749 |
aaataattttgatgatttttgagacaaattttatgacagaaagtaactactaacatcatgttaggtttattaaagttccacatcaaaaacaatacaacat |
26572848 |
T |
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| Q |
167 |
aacattatgtttatatttgt |
186 |
Q |
| |
|
|||| |||||||||| |||| |
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| T |
26572849 |
aacactatgtttataattgt |
26572868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 26577188 - 26577294
Alignment:
| Q |
43 |
taattggttttattttattcaatacaaatgattttgatgatgtttgag--acaaatttcatgacagaaagtgactcctatatcatgtt-ggatttagtaa |
139 |
Q |
| |
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||||||| || |||| ||||||||||| ||||||||||||| ||||| |||||||| |||||||||| | | | ||||||||||| ||||||| ||| |
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| T |
26577188 |
taattggcttcatttgattcaatacaattgattttgatgatagttgagacacaaatttgatgacagaaactaagtattatatcatgttgggatttattaa |
26577287 |
T |
|
| Q |
140 |
agtccca |
146 |
Q |
| |
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|||||| |
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|
| T |
26577288 |
tgtccca |
26577294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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