View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7960_low_46 (Length: 237)
Name: NF7960_low_46
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27026209 - 27025990
Alignment:
| Q |
1 |
agttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaacatttgatggaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27026209 |
agttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaacattcgatggaaaaa |
27026110 |
T |
|
| Q |
101 |
ttggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcctttcagtcactag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026109 |
ttggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcctttcagtcactag |
27026010 |
T |
|
| Q |
201 |
agctattataagatcatttt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27026009 |
agctattataagatcatttt |
27025990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 8696048 - 8695996
Alignment:
| Q |
133 |
gctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaat |
185 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||| ||| |||| |
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|
| T |
8696048 |
gctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaat |
8695996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10113796 - 10114015
Alignment:
| Q |
1 |
agttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaacatttgatggaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
10113796 |
agttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaacattcgatggaaaaa |
10113895 |
T |
|
| Q |
101 |
ttggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcctttcagtcactag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10113896 |
ttggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcctttcagtcactag |
10113995 |
T |
|
| Q |
201 |
agctattataagatcatttt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10113996 |
agctattataagatcatttt |
10114015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 34223837 - 34223785
Alignment:
| Q |
133 |
gctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaat |
185 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||| ||| |||| |
|
|
| T |
34223837 |
gctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaat |
34223785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33021982 - 33021763
Alignment:
| Q |
1 |
agttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaacatttgatggaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
33021982 |
agttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaacattcgatggaaaaa |
33021883 |
T |
|
| Q |
101 |
ttggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcctttcagtcactag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33021882 |
ttggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcctttcagtcactag |
33021783 |
T |
|
| Q |
201 |
agctattataagatcatttt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33021782 |
agctattataagatcatttt |
33021763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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