View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_48 (Length: 236)
Name: NF7960_low_48
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 38271741 - 38271508
Alignment:
| Q |
2 |
aatcatagtaactatgttaagtctattacattcctgcagtttaaaaatgctagcaaggcctacttactttcagttgctttccaaattattcaccttttca |
101 |
Q |
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| T |
38271741 |
aatcatagtaactatgttaagtctattacattcctgcagtttaaaaatgctagcaaggcctacttactttcagttgctttccaaattattcaccttttca |
38271642 |
T |
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| Q |
102 |
agaactacattctcaaataatcacctcaacttaaaaagaaaatcttaattcttacacaaacaactattcctcatagtaaataagattaactctattccaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38271641 |
agaactacattctcaaataatcacctcaacttaaaaagaaaatcttaattcttacacaaacaactattcctcatagtaaataagattaactctattccaa |
38271542 |
T |
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| Q |
202 |
cccttcagtttaaaaatgctaatcagacctactt |
235 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
38271541 |
cccttcagtttaaaaatgcttatcagacctactt |
38271508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 38263036 - 38262896
Alignment:
| Q |
23 |
tctattacattcctgcagtttaaaaatgctagcaaggcctacttactttcagttgctttccaaattattcaccttttcaagaactacattctcaaataat |
122 |
Q |
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||||||||| |||| || ||||||||| ||| ||| |||||||| |||||||| |||| || ||| || |||| |||||||||| | || | |||||| |
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| T |
38263036 |
tctattacaatccttcactttaaaaatcctaataagacctacttaatttcagtttctttggaagttaatcgccttatcaagaactagactccctaataat |
38262937 |
T |
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| Q |
123 |
cacctcaacttaaaaagaaaatcttaattcttacacaaaca |
163 |
Q |
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| T |
38262936 |
cacctcagcttacaaaggcaatcttaattcttacacaaaca |
38262896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 38274730 - 38274635
Alignment:
| Q |
18 |
ttaagtctattacattcctgcagtttaaaaatgctagcaaggcctacttactttcagttgctttccaaattattcaccttttcaagaactacattc |
113 |
Q |
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||||||| |||||| ||| |||||||||| ||||| ||| ||| |||| ||||||||| ||| || ||| |||||||||||||||||| |||| |
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| T |
38274730 |
ttaagtcgattacaatcccgcagtttaaacgtgctaacaaaaccttcttaatttcagttgttttggaagttaatcaccttttcaagaactagattc |
38274635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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