View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7960_low_49 (Length: 234)

Name: NF7960_low_49
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7960_low_49
NF7960_low_49
[»] chr4 (4 HSPs)
chr4 (1-212)||(55212994-55213213)
chr4 (1-120)||(29344040-29344167)
chr4 (1-127)||(33509309-33509443)
chr4 (1-127)||(35829802-35829936)
[»] chr5 (2 HSPs)
chr5 (1-127)||(39394508-39394642)
chr5 (1-127)||(13352514-13352633)
[»] chr1 (2 HSPs)
chr1 (1-111)||(43117681-43117799)
chr1 (37-127)||(41915322-41915414)
[»] chr7 (2 HSPs)
chr7 (1-117)||(46199492-46199616)
chr7 (1-117)||(15594145-15594269)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 55213213 - 55212994
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaatgat--------gattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  55213213 acacattagaaacaattcaacatgttaacagttaacaatgataaaatgatgattcaattaacaatcaacaatacccaccttcggaattttctcatacact 55213114  T
Q  93 gttaggcttccataggatggtgaacccatggagtagtcagaagaggccaaagactctctcctatggtaatttcggcgctttttctctacactgatagctt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55213113 gttaggcttccataggatggtgaacccatggagtagtcagaagaggccaaagactctctcctatggtaatttcggcgctttttctctacgctgatagctt 55213014  T
Q  193 cattcgaatgattcactctg 212  Q
    ||||||||||||||||||||    
T  55213013 cattcgaatgattcactctg 55212994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29344040 - 29344167
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaa--------tgatgattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    |||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  29344040 acacattagaaacaattctacatgttaacagttaacaaagataaaatgatgattcaattaacaatcaacaatactcacctttggaattttctcacacatt 29344139  T
Q  93 gttaggcttccataggatggtgaaccca 120  Q
    ||||||||||||||||||| ||||||||    
T  29344140 gttaggcttccataggatgatgaaccca 29344167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 33509443 - 33509309
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaa--------tgatgattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    |||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33509443 acacattagaaacaattctacatgttaacagttaacaaagataaaatgatgattcaattaacaatcaacaatactcacctttggaattttctcacacact 33509344  T
Q  93 gttaggcttccataggatggtgaacccatggagta 127  Q
    ||||||||||||||| ||| ||||| || ||||||    
T  33509343 gttaggcttccatagaatgatgaactcaaggagta 33509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 35829802 - 35829936
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaa--------tgatgattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    |||||||||||||||||| |||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35829802 acacattagaaacaattctacatgttaacggttaacaaagataaaatgatgattcaattaacaatcaacaatactcacctttggaattttctcacacact 35829901  T
Q  93 gttaggcttccataggatggtgaacccatggagta 127  Q
    ||||||||||||||| ||| ||||| || ||||||    
T  35829902 gttaggcttccatagaatgatgaactcaaggagta 35829936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 39394642 - 39394508
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaa--------tgatgattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    ||||||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39394642 acacattagaaacaattcaacatgttaaccgttaacaaagataaaatgatgattcaattaacaatcaacaatactcacctttggaattttctcacacact 39394543  T
Q  93 gttaggcttccataggatggtgaacccatggagta 127  Q
     ||| |||||||||| ||||||||| || ||||||    
T  39394542 tttaagcttccatagcatggtgaactcaaggagta 39394508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 13352633 - 13352514
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaatgatgattcaattaacaatcaacaatactcacctttggaattttctcatacactgttaggct 100  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  13352633 acacattagaaacaattcaacatgttaact-------atgatgattcaattaacaatcaacaatactcaactttggaattttctcacacacttttaggct 13352541  T
Q  101 tccataggatggtgaacccatggagta 127  Q
    ||||||||||||||||| || ||||||    
T  13352540 tccataggatggtgaactcaaggagta 13352514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43117799 - 43117681
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaa--------tgatgattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    |||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  43117799 acacattagaaacaattctacatgttaacagttaacaaagataaaatgatgattcaattaacaatcaacaatactcacctttggaattttctcgcacact 43117700  T
Q  93 gttaggcttccataggatg 111  Q
    |||||||||||||||||||    
T  43117699 gttaggcttccataggatg 43117681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 41915322 - 41915414
Alignment:
Q  37 aatgatgattcaattaacaatcaacaatactcacctttggaattttct--catacactgttaggcttccataggatggtgaacccatggagta 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| ||||| || ||||||    
T  41915322 aatgatgattcaattaacaatcaacaatactcacctttggaattttctcacacacactgttaggcttccataggatgatgaactcaaggagta 41915414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 46199616 - 46199492
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaa--------tgatgattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    |||||||||||||||||| ||||||||| |||||||||        |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  46199616 acacattagaaacaattctacatgttaatagttaacaaagataaaatgatgattcaattaacaatcaacaatactcacctttcgaattttctcacacact 46199517  T
Q  93 gttaggcttccataggatggtgaac 117  Q
    ||||||||||||||||||| |||||    
T  46199516 gttaggcttccataggatgatgaac 46199492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 15594269 - 15594145
Alignment:
Q  1 acacattagaaacaattcaacatgttaacagttaacaa--------tgatgattcaattaacaatcaacaatactcacctttggaattttctcatacact 92  Q
    ||||||||||||||| | |||||||||||| |||||||        ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  15594269 acacattagaaacaacttaacatgttaacaattaacaaagataaaatgatgattcaattaataatcaacaatactcatctttggaattttctcacacact 15594170  T
Q  93 gttaggcttccataggatggtgaac 117  Q
    |||||||||||||||||||||||||    
T  15594169 gttaggcttccataggatggtgaac 15594145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University