View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_5 (Length: 557)
Name: NF7960_low_5
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 21 - 541
Target Start/End: Complemental strand, 29296170 - 29295650
Alignment:
| Q |
21 |
tcaaccacacgtcacaaagattctccgatccaacgacttctcttctcttctcgaaacaatccaaatcttcatccaatccaaggatccttcattccaaacc |
120 |
Q |
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| T |
29296170 |
tcaaccacatgtcacaaagattctccgatccaacgacttctcttctcttctcgaaacaatccaaatcttcatccaatccaaggatccttcattccaaacc |
29296071 |
T |
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| Q |
121 |
gttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaaactcaccctaaactcgagatccgaaacgaagctg |
220 |
Q |
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| T |
29296070 |
gttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaaactcaccctaaactcgagatccgaaacgaagctg |
29295971 |
T |
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| Q |
221 |
tttcgattcttcttcacattttcaaaaaatctgataaatggaatcctagtatgcttaatcaactcaaagaacctcttcttaattcgctcaagaaagaata |
320 |
Q |
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| T |
29295970 |
tttcgattcttcttcacattttcaaaaaatctgataaatggaatcctagtatgcttaatcaactcaaagaacctcttattaattcgctcaagaaagaata |
29295871 |
T |
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| Q |
321 |
tagtgaatctctttttcaacctctctgtgaaacgatcggtctttgtgctgctagggtttatcagtatccatatctcggcggttggattaagcttctccag |
420 |
Q |
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| T |
29295870 |
tagtgaatctctttttcaacctctctgtgaaacgatcggtctttgtgctgctagggtttatcagtatccatatctcggcggttggattaagcttctccag |
29295771 |
T |
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| Q |
421 |
tatgtttgtgattgtttctccggcggaaatgtaagacttatgaaaggattaataatgttagcggaattgccggaagaagtggttgaaaatagagaatttt |
520 |
Q |
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| T |
29295770 |
tatgtttgtgattgtttctccggcggaaatgtaagacttatgaaaggattaataatgttagcggaatttccggaagaagtggttgaaaatagagaatttt |
29295671 |
T |
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| Q |
521 |
ggttagatcaagggaattttg |
541 |
Q |
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| T |
29295670 |
ggttagatcaagggaattttg |
29295650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 29333519 - 29333455
Alignment:
| Q |
122 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
186 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
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| T |
29333519 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
29333455 |
T |
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