View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7960_low_50 (Length: 231)
Name: NF7960_low_50
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_50 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27026543 - 27026313
Alignment:
| Q |
1 |
gatttggaaaaaattcgtgatgtgcctttgcataaaaggacaacgattgaatctttagcacatgccttagatgtcaaaaagactacgttatttcggctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27026543 |
gatttggaaaaaattcgtgatgtgcctttgcataaaaggacaacgattgaatctttagcacatgccttagatgtcaaaaagactacgttatttcggctaa |
27026444 |
T |
|
| Q |
101 |
taaagtctgggaaaatacggaagcattcaaatgctataaagcctttgttgaaggaagaaaacaaaagagcaagattacaattttgcattaaaatgattga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27026443 |
taaagtccgggaaaatacggaagcattcaaatgctataaagcctttcttgaaggaagaaaacaaaagagcaagattacaattttgcattaaaatgattga |
27026344 |
T |
|
| Q |
201 |
tgccaatagcataccaaacaatccaactttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27026343 |
tgccaatagcataccaaacaatccaactttt |
27026313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 33022315 - 33022085
Alignment:
| Q |
1 |
gatttggaaaaaattcgtgatgtgcctttgcataaaaggacaacgattgaatctttagcacatgccttagatgtcaaaaagactacgttatttcggctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33022315 |
gatttggaaaaaattcgtgatgtgccgttgcataaaaggacaacgattgaatctttagcacatgtcttagatgtcaaaaagactacgttatttcggctaa |
33022216 |
T |
|
| Q |
101 |
taaagtctgggaaaatacggaagcattcaaatgctataaagcctttgttgaaggaagaaaacaaaagagcaagattacaattttgcattaaaatgattga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33022215 |
taaagtccgggaaaatacggaagcattcaaatgctataaagcctttcttgaaggaagaaaacaaaagagcaagattacaattttgcattaaaatgattga |
33022116 |
T |
|
| Q |
201 |
tgccaatagcataccaaacaatccaactttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33022115 |
tgccaatagcataccaaacaatccaactttt |
33022085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10113462 - 10113692
Alignment:
| Q |
1 |
gatttggaaaaaattcgtgatgtgcctttgcataaaaggacaacgattgaatctttagcacatgccttagatgtcaaaaagactacgttatttcggctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10113462 |
gatttggaaaaaattcgtgatgtgcctttgcataaaaggacaacgattgaatctttagcatatgccttagatgtcaaaaagactacgttattttggctaa |
10113561 |
T |
|
| Q |
101 |
taaagtctgggaaaatacggaagcattcaaatgctataaagcctttgttgaaggaagaaaacaaaagagcaagattacaattttgcattaaaatgattga |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10113562 |
taaagttcgggaaaatacggaagcattcaaatgctataaagcctttcttgaaggaagaaaacaaaagagcaagattacaattttgcattaaaatgattga |
10113661 |
T |
|
| Q |
201 |
tgccaatagcataccaaacaatccaactttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10113662 |
tgccaatagcataccaaacaatccaactttt |
10113692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 30461452 - 30461390
Alignment:
| Q |
123 |
gcattcaaatgctataaagcctttgttgaaggaagaaaacaaaagagcaagattacaattttg |
185 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |
|
|
| T |
30461452 |
gcattcaaatgctataaagcctttgtaaaaagaagaaaacaaaagagctagattgcaattttg |
30461390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University