View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7960_low_52 (Length: 226)
Name: NF7960_low_52
Description: NF7960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7960_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 33846405 - 33846605
Alignment:
| Q |
12 |
gagtttggaggtattggacagttggttcctaatacaccatcttgccatgaatttttcctttgtttaatgccattcctagtttacaacaacaatgttaaac |
111 |
Q |
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| T |
33846405 |
gagtttggaggtattggacagttggttcctaataccccatcttgccatgaatttttcctttgtttaatgccattcctagtttacaacaacaatgttaaac |
33846504 |
T |
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| Q |
112 |
cattttctcaaataaaatgtcacattatagtaagaaaatgcacaa--tctttgtaatgacatatatataatctcaaaaacagaaactcaccaagtgagta |
209 |
Q |
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| T |
33846505 |
cattttctcaaataaaatgtcacattatactaagaaaatgcacaatctctttgtaatgacatatatataaactcaaaaacagaaactcaccaagtgagta |
33846604 |
T |
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| Q |
210 |
g |
210 |
Q |
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| T |
33846605 |
g |
33846605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 33834647 - 33834696
Alignment:
| Q |
12 |
gagtttggaggtattggacagttggttcctaatacaccatcttgccatga |
61 |
Q |
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| T |
33834647 |
gagttaggagggattggacaattggttcctaaaactccatcttgccatga |
33834696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 6796853 - 6796771
Alignment:
| Q |
12 |
gagtttggaggtattggacagttggttcctaatacaccatcttgccatgaatttttcctttgtttaatgccattcctagttta |
94 |
Q |
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| T |
6796853 |
gagtttggtggaataggacagtttgttcccagtactccatcttgccatgaatttttcctttgtttaatgccattcctagttta |
6796771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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